Neocortex: Yao et al 2021 “Allen Brain Map” (10X genomics mouse)
Search the neuron dataset by Yao et al: GABAergic neurons
More information on methods here
Heatmap units: trimmed mean (25%-75%) Log2(CPM+1)
Original study website: https://celltypes.brain-map.org/rnaseq/mouse_ctx-hpf_10x
Click here to view cell-type metadata
| Metcell ID | Cell Type | Class | Supertype label |
|---|---|---|---|
| 365_Oligo | Oligodendrocyte precursor cell | Non-Neuronal | Oligo Pdgfra |
| 366_Oligo | Oligodendrocyte precursor cell | Non-Neuronal | Oligo Pdgfra |
| 367_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Neu4 |
| 368_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Neu4 |
| 369_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Enpp6 |
| 370_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Enpp6 |
| 371_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Enpp6 |
| 372_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Opalin |
| 373_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Opalin |
| 374_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Opalin |
| 375_Oligo | Oligodendrocyte | Non-Neuronal | Oligo Opalin |
| 376_Astro | Astrocyte | Non-Neuronal | Astro Slc7a10 |
| 377_Astro | Astrocyte | Non-Neuronal | Astro Gfap Apoe |
| 378_Astro | Astrocyte | Non-Neuronal | Astro Gfap Apoe |
| 379_Endo | Endothelial | Non-Neuronal | Endo Tek |
| 380_SMC-Peri | Smooth muscle cell | Non-Neuronal | SMC Acta2 |
| 382_SMC-Peri | Smooth muscle cell | Non-Neuronal | Peri Atp13a5 |
| 383_VLMC | Vascular and leptomeningeal cells | Non-Neuronal | VLMC Dcn |
| 384_VLMC | Vascular and leptomeningeal cells | Non-Neuronal | VLMC Dcn |
| 385_VLMC | Vascular and leptomeningeal cells | Non-Neuronal | VLMC Dcn |
| 386_Micro-PVM | Microglia-Perivascular macrophage | Non-Neuronal | MIcro Siglech |
| 387_Micro-PVM | Microglia-Perivascular macrophage | Non-Neuronal | PVM Mrc1 |
| 388_Micro-PVM | Microglia-Perivascular macrophage | Non-Neuronal | PVM Mrc1 |