Methods: Sjöstedt et al 2020 “ProteinAtlas”
Cell-types: All
Brain regions: Amygdala; Basal ganglia; Cerebellum; Cerebral cortex; Corpus callosum; Hippocampal formation; Hypothalamus; Midbrain; Olfactory region; Pituitary gland; Pons and medulla; Retina; Thalamus
Techniques: Bulk RNAseq using Illumina HiSeq2500.
Age of mice: WT male & female C57BL/6J mice; P60.
Data processing for BrainPalmSeq: Data were downloaded from proteinatlas.org (“RNA mouse brain region gene data”) and not further processed.
Heatmap units: Protein-coding transcripts per million (pTPM)
References: Sjöstedt, E., Zhong, W., Fagerberg, L., Karlsson, M., Mitsios, N., Adori, C., Oksvold, P., Edfors, F., Limiszewska, A., Hikmet, F., et al. (2020). An atlas of the protein-coding genes in the human, pig, and mouse brain. Science 367, eaay5947.
Website: https://www.proteinatlas.org/
Original data availability: https://www.proteinatlas.org/about/download; https://www.proteinatlas.org/download/rna_mouse_brain_hpa.tsv.zip