Whole Brain: Saunders et al 2018 “DropViz”
Search the neuron dataset by Saunders et al: Anatomical region
More information on methods here
Heatmap units: mean log2(counts per 10,000 + 1)
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Index | Metacell ID | Tissue | Cell Type | Class marker | Type marker | Full name | Common name |
1 | CB_7-1 | Cerebellum | Astrocyte | Gja | Slc1a3 | Astrocyte.Gja.Slc1a3 | Bergmann Glia |
2 | CB_8-1 | Cerebellum | Astrocyte | Gja1 | Gfap | Gja1.Gfap | Gfap+ astrocytes |
3 | CB_8-2 | Cerebellum | Astrocyte | Gja1 | Htra1 | Gja1.Htra1 | Gfap- astrocytes |
4 | CB_9-1 | Cerebellum | Choroid_Plexus | Ttr | Ttr | Choroid_Plexus.Ttr | Choroid_Plexus.Ttr |
5 | CB_10-1 | Cerebellum | Endothelial_Stalk | Flt1 | Mgp | Endothelial_Stalk.Flt1.Mgp | Endothelial_Stalk.Flt1.Mgp |
6 | CB_10-2 | Cerebellum | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
7 | CB_10-3 | Cerebellum | Endothelial_Stalk | Flt1 | Lrg1 | Endothelial_Stalk.Flt1.Lrg1 | Endothelial_Stalk.Flt1.Lrg1 |
8 | CB_11-1 | Cerebellum | Endothelial_Tip | Dcn | Nnat | Endothelial_Tip.Dcn.Nnat | Endothelial_Tip.Dcn.Nnat |
9 | CB_11-2 | Cerebellum | Endothelial_Tip | Dcn | Apod | Endothelial_Tip.Dcn.Apod | Endothelial_Tip.Dcn.Apod |
10 | CB_5-1 | Cerebellum | Microglia | C1qb | Mrc1-Tmem119 | Microglia.C1qb.Mrc1-Tmem119 | Resident macrophage |
11 | CB_11-3 | Cerebellum | Mural | Acta2Rgs5 | Acta2 | Mural.Acta2Rgs5.Acta2 | Mural.Acta2Rgs5.Acta2 |
12 | CB_11-4 | Cerebellum | Mural | Acta2Rgs5 | Kcnj8 | Mural.Acta2Rgs5.Kcnj8 | Mural.Acta2Rgs5.Kcnj8 |
13 | CB_11-5 | Cerebellum | Mural | Acta2Rgs5 | Rgs5 | Mural.Acta2Rgs5.Rgs5 | Mural.Acta2Rgs5.Rgs5 |
14 | CB_6-1 | Cerebellum | Oligodendrocyte | Trf | Il33 | Oligodendroyte.Trf.Il33 | Oligodendroyte.Trf.Il33 |
15 | CB_6-2 | Cerebellum | Oligodendrocyte | Trf | Klk6 | Oligodendrocyte.Trf.Klk6 | Oligodendrocyte.Trf.Klk6 |
16 | CB_6-3 | Cerebellum | Polydendrocyte | Tnr | Tnr | Polydendrocyte.Tnr.Tnr | Polydendrocyte.Tnr.Tnr |
17 | CB_1-1 | Cerebellum | Neuron Cerebellum | Slc17a7 | Gabra6 | Neuron.Slc17a7.Gabra6 | Granule cells |
18 | CB_2-1 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Pcp2 | Neuron.Gad1Gad2.Pcp2 | Purkinje Neurons |
19 | CB_3-1 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Pvalb-Nefh | Neuron.Gad1Gad2.Pvalb-Nefh | Cerebellum basket cells 1 |
20 | CB_3-2 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Pvalb-Rab3b | Neuron.Gad1Gad2.Pvalb-Rab3b | Cerebellum basket cells 2 |
21 | CB_3-3 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Pvalb-Cadm1 | Neuron.Gad1Gad2.Pvalb-Cadm1 | Cerebellum basket cells 3 |
22 | CB_3-4 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Pvalb – Chrm2 | Neuron.Gad1Gad2.Pvalb-Chrm2 | Cerebellum basket cells 4 |
23 | CB_4-1 | Cerebellum | Neuron Cerebellum | Slc17a6 | Sln | Neuron.Slc17a6.Sln | Unipolar brush cell |
24 | CB_4-2 | Cerebellum | Neuron Cerebellum | Gad1Gad2 | Lgi2 | Neuron.Gad1Gad2.Lgi2 | Golgi interneuron |
25 | CB_4-3 | Cerebellum | Neuron Cerebellum | Slc17a6 | Nrgn | Neuron.Slc17a6.Nrgn | Inferior colliculus |
26 | FC_8-1 | Frontal Cortex | Astrocyte | Gja1 | Astrocyte.Gja1 | Gfap- astrocytes | |
27 | FC_8-2 | Frontal Cortex | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Gfap+ astrocytes |
28 | FC_12-1 | Frontal Cortex | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
29 | FC_12-2 | Frontal Cortex | Endothelial_Stalk | Flt1 | Mgp | Endothelial_Stalk.Flt1.Mgp | Endothelial_Stalk.Flt1.Mgp |
30 | FC_12-3 | Frontal Cortex | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
31 | FC_12-4 | Frontal Cortex | Endothelial_Stalk | Flt1 | Cfh | Endothelial_Stalk.Flt1.Cfh | Endothelial_Stalk.Flt1.Cfh |
32 | FC_12-5 | Frontal Cortex | Endothelial_Stalk | Flt1 | Lrg1 | Endothelial_Stalk.Flt1.Lrg1 | Endothelial_Stalk.Flt1.Lrg1 |
33 | FC_14-1 | Frontal Cortex | Endothelial_Tip | Dcn | 1500015O10Rik | Endothelial_Tip.Dcn.1500015O10Rik | Endothelial_Tip.Dcn.1500015O10Rik |
34 | FC_14-2 | Frontal Cortex | Endothelial_Tip | Dcn | Dapl1 | Endothelial_Tip.Dcn.Dapl1 | Endothelial_Tip.Dcn.Dapl1 |
35 | FC_14-3 | Frontal Cortex | Endothelial_Tip | Dcn | Coch | Endothelial_Tip.Dcn.Coch | Endothelial_Tip.Dcn.Coch |
36 | FC_14-4 | Frontal Cortex | Endothelial_Tip | Dcn | Col15a1 | Endothelial_Tip.Dcn.Col15a1 | Endothelial_Tip.Dcn.Col15a1 |
37 | FC_14-5 | Frontal Cortex | Endothelial_Tip | Dcn | Inmt | Endothelial_Tip.Dcn.Inmt | Endothelial_Tip.Dcn.Inmt |
38 | FC_11-3 | Frontal Cortex | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
39 | FC_11-1 | Frontal Cortex | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
40 | FC_11-4 | Frontal Cortex | Microglia | C1qb | Tmem119-Fos | Microglia.C1qb.Tmem119-Fos | Microglia.C1qb.Tmem119-Fos |
41 | FC_13-1 | Frontal Cortex | Mural | Rgs5Acta2 | Cnn1 | Mural.Rgs5Acta2.Cnn1 | Mural.Rgs5Acta2.Cnn1 |
42 | FC_13-2 | Frontal Cortex | Mural | Rgs5Acta2 | Ccnd1 | Mural.Rgs5Acta2.Ccnd1 | Mural.Rgs5Acta2.Ccnd1 |
43 | FC_13-3 | Frontal Cortex | Mural | Rgs5Acta2 | Abcc9 | Mural.Rgs5Acta2.Abcc9 | Mural.Rgs5Acta2.Abcc9 |
44 | FC_13-4 | Frontal Cortex | Mural | Rgs5Acta2 | Col3a1 | Mural.Rgs5Acta2.Col3a1 | Mural.Rgs5Acta2.Col3a1 |
45 | FC_9-1 | Frontal Cortex | Oligodendrocyte | Tnf | Igsf8 | Oligodendrocyte.Tnf.Igsf8 | Oligodendrocyte.Tnf.Igsf8 |
46 | FC_9-2 | Frontal Cortex | Oligodendrocyte | Tnf | Igsf8-Ctps | Oligodendrocyte.Tnf.Igsf8-Ctps | Oligodendrocyte.Tnf.Igsf8-Ctps |
47 | FC_9-3 | Frontal Cortex | Oligodendrocyte | Tnf | Kif5b | Oligodendrocyte.Tnf.Kif5b | Oligodendrocyte.Tnf.Kif5b |
48 | FC_9-4 | Frontal Cortex | Oligodendrocyte | Tnf | Ptgds | Oligodendrocyte.Tnf.Ptgds | Oligodendrocyte.Tnf.Ptgds |
49 | FC_9-5 | Frontal Cortex | Oligodendrocyte | Tnf | Klk6 | Oligodendrocyte.Tnf.Klk6 | Oligodendrocyte.Tnf.Klk6 |
50 | FC_10-1 | Frontal Cortex | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
51 | FC_10-2 | Frontal Cortex | Polydendrocyte | Tnr | Dlx1 | Polydendrocyte.Tnr.Dlx1 | Polydendrocyte.Tnr.Dlx1 |
52 | FC_10-3 | Frontal Cortex | Polydendrocyte | Tnr | Pdgfa | Polydendrocyte.Tnr.Pdgfa | Polydendrocyte.Tnr.Pdgfa |
53 | FC_10-4 | Frontal Cortex | Polydendrocyte | Tnr | Opalin | Polydendrocyte.Tnr.Opalin | Polydendrocyte.Tnr.Opalin |
54 | FC_10-5 | Frontal Cortex | Polydendrocyte | Tnr | Bmp4- Ptgds | Polydendrocyte.Tnr.Bmp4- Ptgds | Polydendrocyte.Tnr.Bmp4- Ptgds |
55 | FC_10-6 | Frontal Cortex | Polydendrocyte | Tnr | Bmp4-Gpr17 | Polydendrocyte.Tnr.Bmp4-Gpr17 | Polydendrocyte.Tnr.Bmp4-Gpr17 |
56 | FC_1-1 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Cplx3-Npy | Neuron.Gad1Gad2.Cplx3 | Neuron.Gad1Gad2.Cplx3 |
57 | FC_1-10 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2-Slc17a8 | Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 |
58 | FC_1-11 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg |
59 | FC_1-2 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln |
60 | FC_1-3 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat |
61 | FC_1-4 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 |
62 | FC_1-5 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2-Chat | Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 | Cholinergic cortical interneurons |
63 | FC_1-6 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x |
64 | FC_1-7 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Synpr-Dpy19l1 | Neuron.Gad1Gad2.Synpr-Dpy19l1 | Neuron.Gad1Gad2.Synpr-Dpy19l1 |
65 | FC_1-8 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Cplx3-Dpy19l1 | Neuron.Gad1Gad2.Cplx3-Dpy19l1 | Neuron.Gad1Gad2.Cplx3-Dpy19l1 |
66 | FC_1-9 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Cplx3-Crim1 | Neuron.Gad1Gad2.Cplx3-Crim1 | Neuron.Gad1Gad2.Cplx3-Crim1 |
67 | FC_11-2 | Frontal Cortex | Neuron Frontal Cortex | Slc17a6 | Reln | Neuron.Slc17a6.Reln | Cajal-Retzius |
68 | FC_2-1 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Sst-Chodl | Neuron.Gad1Gad2.Sst-Chodl | MGE-derived cortical interneurons–Long-range-projecting interneurons |
69 | FC_2-10 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2-Th | Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 | MGE-derived cortical interneurons |
70 | FC_2-2 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn | MGE-derived cortical interneurons–Martinotti cells |
71 | FC_2-3 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Sst-Calb2 | Neuron.Gad1Gad2.Sst-Calb2 | MGE-derived cortical interneurons–Martinotti cells |
72 | FC_2-4 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Sst-Crh | Neuron.Gad1Gad2.Sst-Crh | MGE-derived cortical interneurons–Martinotti cells |
73 | FC_2-5 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 | MGE-derived cortical interneurons–Martinotti cells |
74 | FC_2-6 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b | MGE-derived cortical interneurons–Chandelier cells |
75 | FC_2-7 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Pvalb | Neuron.Gad1Gad2.Pvalb | MGE-derived cortical interneurons–basket cells |
76 | FC_2-8 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm | MGE-derived cortical interneurons–basket cells |
77 | FC_2-9 | Frontal Cortex | Neuron Frontal Cortex | Gad1Gad2 | Pvalb-Necab1 | Neuron.Gad1Gad2.Pvalb-Necab1 | MGE-derived cortical interneurons–basket cells |
78 | FC_3-1 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Sema5a | Neuron.Slc17a7.Syt6-Sema5a | Deep layer pyramidal cells |
79 | FC_3-10 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7-Slc17a8 | Syt6-Cplx3 | Neuron.Slc17a7-Slc17a8.Syt6-Cplx3 | Deep layer pyramidal cells–Cortical Subplate |
80 | FC_3-11 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Bdnf | Neuron.Slc17a7.Syt6-Bdnf | Deep layer pyramidal cells |
81 | FC_3-12 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Kit | Neuron.Slc17a7.Syt6-Kit | Deep layer pyramidal cells |
82 | FC_3-13 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Fos | Neuron.Slc17a7.Syt6-Fos | Deep layer pyramidal cells (IEG) |
83 | FC_3-2 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Etv1 | Neuron.Slc17a7.Syt6-Etv1 | Deep layer pyramidal cells-Etv1 typically marks layer 5b, but some expression in layer 6, especially in medial regions like cingulate |
84 | FC_3-3 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Efna5 | Neuron.Slc17a7.Syt6-Efna5 | Deep layer pyramidal cells |
85 | FC_3-4 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Cyp26b1 | Neuron.Slc17a7.Syt6-Cyp26b1 | Deep layer pyramidal cells |
86 | FC_3-5 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Slc30a3 | Neuron.Slc17a7.Syt6-Slc30a3 | Deep layer pyramidal cells |
87 | FC_3-6 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Slc24a2 | Neuron.Slc17a7.Syt6-Slc24a2 | Deep layer pyramidal cells |
88 | FC_3-7 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Lypd1 | Neuron.Slc17a7.Syt6-Lypd1 | Deep layer pyramidal cells–medial-lateral spatial gradient |
89 | FC_3-8 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7-Slc17a6 | Syt6-Nnat | NeuronSlc17a7-Slc17a6.Syt6-Nnat | Deep layer pyramidal cells–medial cortex |
90 | FC_3-9 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Syt6-Sema3c | Neuron.Slc17a7.Syt6-Sema3c | Deep layer pyramidal cells |
91 | FC_4-1 | Frontal Cortex | Neuron Frontal Cortex | Slc17a6-Slc17a7-Slc17a8 | Fezf2.Slc17a8 | Neuron.Slc17a6-Slc17a7-Slc17a8.Fezf2.Slc17a8 | Deep layer pyramidal cells-Layer 5b |
92 | FC_4-2 | Frontal Cortex | Neuron Frontal Cortex | Slc17a6-Slc17a7 | Fezf2.3110035E14Rik | Neuron.Slc17a6-Slc17a7.Fezf2.3110035E14Rik | Deep layer pyramidal cells-Layer 5b |
93 | FC_5-1 | Frontal Cortex | Neuron Frontal Cortex | Slc17a6-Slc17a7 | Nr4a2 | Neuron.Slc17a6-Slc17a7.Nr4a2 | Claustrum |
94 | FC_6-1 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Nptxr-Calb1 | Neuron.Slc17a7.Nptxr-Calb1 | Superficial layer pyramidal cells–Layer 2/3 |
95 | FC_6-2 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Nptxr-Ndst4 | Neuron.Slc17a7.Nptxr-Ndst4 | Superficial layer pyramidal cells–dorsal endopiriform nucleus or piriform cortex |
96 | FC_6-3 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7-Slc17a6 | Nptxr-Rorb | Neuron.Slc17a7-Slc17a6.Nptxr-Rorb | Deep layer pyramidal cells–Layer 5a |
97 | FC_6-4 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Nptxr-Deptor | Neuron.Slc17a7.Nptxr-Deptor | Deep layer pyramidal cells–Layer 5a |
98 | FC_6-5 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Nptxr-Fos | Neuron.Slc17a7.Nptxr-Fos | Deep layer pyramidal cells (IEG) |
99 | FC_6-6 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Nptxr-Drd1 | Neuron.Slc17a7.Nptxr-Drd1 | Deep layer pyramidal cells |
100 | FC_7-1 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Ndnf | Neuron.Slc17a7.Parm1.Ndnf | Deep layer pyramidal cells–layer 5 |
101 | FC_7-2 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Nnat | Neuron.Slc17a7.Parm1.Nnat | Deep layer pyramidal cells–layer 5 |
102 | FC_7-3 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Lsamp | Neuron.Slc17a7.Parm1.Lsamp | Deep layer pyramidal cells–layer 5 |
103 | FC_7-4 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Fos | Neuron.Slc17a7.Parm1.Fos | Deep layer pyramidal cells–layer 5 (IEG) |
104 | FC_7-5 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Cadm2 | Neuron.Slc17a7.Parm1.Cadm2 | Deep layer pyramidal cells–layer 5 |
105 | FC_7-6 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Nefm | Neuron.Slc17a7.Parm1.Nefm | Deep layer pyramidal cells–layer 5 |
106 | FC_7-7 | Frontal Cortex | Neuron Frontal Cortex | Slc17a7 | Parm1.Tshz2 | Neuron.Slc17a7.Parm1.Tshz2 | Deep layer pyramidal cells–layer 5 |
107 | PC_8-1 | Posterior Cortex | Astrocyte | Gja1 | Htra1 | Astrocyte.Gja1.Igfbp2 | Astrocyte.Gja1.Igfbp2 |
108 | PC_8-2 | Posterior Cortex | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Astrocyte.Gja1.Myoc |
109 | PC_8-3 | Posterior Cortex | Astrocyte | Gja1 | Sparc | Astrocyte.Gja1.Sparc | Astrocyte.Gja1.Sparc |
110 | PC_12-1 | Posterior Cortex | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
111 | PC_12-2 | Posterior Cortex | Endothelial_Stalk | Flt1 | Vwf | Endothelial_Stalk.Flt1.Vwf | Endothelial_Stalk.Flt1.Vwf |
112 | PC_12-3 | Posterior Cortex | Endothelial_Stalk | Flt1 | Gm9946 | Endothelial_Stalk.Flt1.Gm9946 | Endothelial_Stalk.Flt1.Gm9946 |
113 | PC_12-4 | Posterior Cortex | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
114 | PC_14-1 | Posterior Cortex | Endothelial_Tip | Dcn | Mgp-Penk | Endothelial_Tip.Dcn.Mgp-Penk | Endothelial_Tip.Dcn.Mgp-Penk |
115 | PC_14-2 | Posterior Cortex | Endothelial_Tip | Dcn | Mgp-Clu | Endothelial_Tip.Dcn.Mgp-Clu | Endothelial_Tip.Dcn.Mgp-Clu |
116 | PC_14-3 | Posterior Cortex | Endothelial_Tip | Dcn | Nnat | Endothelial_Tip.Dcn.Nnat | Endothelial_Tip.Dcn.Nnat |
117 | PC_14-4 | Posterior Cortex | Endothelial_Tip | Dcn | Coch | Endothelial_Tip.Dcn.Coch | Endothelial_Tip.Dcn.Coch |
118 | PC_14-5 | Posterior Cortex | Endothelial_Tip | Dcn | Inmt | Endothelial_Tip.Dcn.Inmt | Endothelial_Tip.Dcn.Inmt |
119 | PC_11-2 | Posterior Cortex | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
120 | PC_11-1 | Posterior Cortex | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
121 | PC_11-3 | Posterior Cortex | Microglia | C1qb | Tmem119-Fos | Microglia.C1qb.Tmem119-Fos | Microglia |
122 | PC_11-4 | Posterior Cortex | Microglia | C1qb | Tmem119-Junb | Microglia.C1qb.Tmem119-Junb | Microglia |
123 | PC_13-1 | Posterior Cortex | Mural | Acta2Rgs5 | Acta2 | Mural.Acta2Rgs5.Acta2 | Mural.Acta2Rgs5.Acta2 |
124 | PC_13-2 | Posterior Cortex | Mural | Acta2Rgs5 | Fos | Mural.Acta2Rgs5.Fos | Mural.Acta2Rgs5.Fos |
125 | PC_13-3 | Posterior Cortex | Mural | Acta2Rgs5 | Rgs5 | Mural.Acta2Rgs5Rgs5 | Mural.Acta2Rgs5Rgs5 |
126 | PC_13-4 | Posterior Cortex | Mural | Acta2Rgs5 | Kcnj8-Abcc9 | Mural.Acta2Rgs5.Kcnj8-Abcc9 | Mural.Acta2Rgs5.Kcnj8-Abcc9 |
127 | PC_13-5 | Posterior Cortex | Mural | Acta2Rgs5 | Abcc9 | Mural.Acta2Rgs5.Abcc9 | Mural.Acta2Rgs5.Abcc9 |
128 | PC_9-1 | Posterior Cortex | Oligodendrocyte | Tfr | Ctps | Oligodendrocyte.Tfr.Ctps | Oligodendrocyte.Tfr.Ctps |
129 | PC_9-2 | Posterior Cortex | Oligodendrocyte | Tfr | Tmem2 | Oligodendrocyte.Tfr.Tmem2 | Oligodendrocyte.Tfr.Tmem2 |
130 | PC_9-3 | Posterior Cortex | Oligodendrocyte | Tfr | Klk6 | Oligodendrocyte.Tfr.Klk6 | Oligodendrocyte.Tfr.Klk6 |
131 | PC_9-4 | Posterior Cortex | Oligodendrocyte | Tfr | Il33 | Oligodendrocyte.Tfr.Il33 | Oligodendrocyte.Tfr.Il33 |
132 | PC_9-5 | Posterior Cortex | Oligodendrocyte | Tfr | Sez6 | Oligodendrocyte.Tfr.Sez6 | Oligodendrocyte.Tfr.Sez6 |
133 | PC_10-1 | Posterior Cortex | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
134 | PC_10-2 | Posterior Cortex | Polydendrocyte | Tnr | Dlx1 | Polydendrocyte.Tnr.Dlx1 | Polydendrocyte.Tnr.Dlx1 |
135 | PC_10-3 | Posterior Cortex | Polydendrocyte | Tnr | Tmsb4x | Polydendrocyte.Tnr.Tmsb4x | Polydendrocyte.Tnr.Tmsb4x |
136 | PC_10-4 | Posterior Cortex | Polydendrocyte | Tnr | Lims2-Tmsb4x | Polydendrocyte.Tnr.Lims2-Tmsb4x | Polydendrocyte.Tnr.Lims2-Tmsb4x |
137 | PC_1-1 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Cplx3 | Neuron.Slc17a7.Syt6-Cplx3 | Cortical Subplate pyramidal cells |
138 | PC_1-2 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a8 | Syt6-Lancl3 | Neuron.Slc17a7-Slc17a8.Syt6-Lancl3 | Cortical Subplate pyramidal cells |
139 | PC_1-3 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Tshz2-Nrep | Neuron.Slc17a7.Syt6-Tshz2-Nrep | Subiculum and Entorhinal Cortex |
140 | PC_1-4 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Sla | Neuron.Slc17a7.Syt6-Sla | Layer6a |
141 | PC_1-5 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Nnat | Neuron.Slc17a7.Syt6-Nnat | Neuron.Slc17a7.Syt6-Nnat |
142 | PC_1-6 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Slc24a2 | Neuron.Slc17a7.Syt6-Slc24a2 | Cadm2+, not selective |
143 | PC_1-7 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Tox | Neuron.Slc17a7.Syt6-Tox | Neuron.Slc17a7.Syt6-Tox |
144 | PC_1-8 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Nefm | Neuron.Slc17a7.Syt6-Nefm | Layer 6a |
145 | PC_1-9 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Syt6-Fos | Neuron.Slc17a7.Syt6-Fos | IEG+ |
146 | PC_2-1 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Ddit4l | Neuron.Sc17a7.Calb1-Ddit4l | Neurofilament, Layer4? |
147 | PC_2-10 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a6 | Rorb-Pcdh20 | Neuron.Slc17a7-Slc17a6.Rorb-Pcdh20 | Layer 5a |
148 | PC_2-11 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Rorb-Gpr83 | Neuron.Sc17a7.Rorb-Gpr83 | Layer 5a |
149 | PC_2-12 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Fermt1 | Neuron.Sc17a7.Fermt1 | Subiculum/Parasubiculum |
150 | PC_2-13 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a6 | Calb1-Rorb-Il1rapl2 | Neuron.Slc17a7-Slc17a6.Calb1-Rorb-Il1rapl2 | Layer 5b |
151 | PC_2-14 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a6 | Tshz2 | Neuron.Slc17a7-Slc17a6.Tshz2 | Retrosplenial cortex (RSG)/Subiculum/Parasubiculum |
152 | PC_2-15 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Oprk1 | Neuron.Sc17a7.Oprk1 | Claustrum? |
153 | PC_2-16 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Crym | Neuron.Sc17a7.Crym | Subiculum |
154 | PC_2-17 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Sema3e-Nnat | Neuron.Sc17a7.Sema3e-Nnat | Layer 6 |
155 | PC_2-18 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Sema3e-Onecut2 | Neuron.Sc17a7.Sema3e-Onecut2 | Layer 6 |
156 | PC_2-2 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Tshz2 | Neuron.Sc17a7.Calb1-Tshz2 | Retrosplenial cortex (RSG)/Entorhinal cortex, Layer 2/3 |
157 | PC_2-3 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Tshz2-Smoc1 | Neuron.Sc17a7.Tshz2-Smoc1 | Agranular Retrosplenial cortex (RSG) (Smoc1+) |
158 | PC_2-4 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Fos | Neuron.Sc17a7.Calb1-Fos | Layer 2/3, IEG+ |
159 | PC_2-5 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Lpl | Neuron.Sc17a7.Calb1-Lpl | Layer 2/3 |
160 | PC_2-6 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Otof | Neuron.Sc17a7.Calb1-Otof | Layer 2/3 |
161 | PC_2-7 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Lpl-Penk | Neuron.Sc17a7.Calb1-Lpl-Penk | Layer 2/3 |
162 | PC_2-8 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Calb1-Lpl-Cadm2 | Neuron.Sc17a7.Calb1-Lpl-Cadm2 | Layer 2/3, Cadm2+ |
163 | PC_2-9 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Rorb-BC006965 | Neuron.Sc17a7.Rorb-BC006965 | Layer 5a, BC006965+ |
164 | PC_3-1 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Cbln1 | Neuron.Slc17a7.Bcl6-Cbln1 | Layer 5a, entorhinal cortex , Cbln1+ |
165 | PC_3-10 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Npnt | Neuron.Slc17a7.Bcl6-Npnt | Layer 5a |
166 | PC_3-2 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Dditl | Neuron.Slc17a7.Bcl6-Dditl | Layer 5a |
167 | PC_3-3 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-C1ql2 | Neuron.Slc17a7.Bcl6-C1ql2 | Retrosplenial cortex (RSG), layer 5a |
168 | PC_3-4 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Tcerg1l | Neuron.Slc17a7.Bcl6-Tcerg1l | Layer 5a |
169 | PC_3-5 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Fos | Neuron.Slc17a7.Bcl6-Fos | Layer 5a, IEG+ |
170 | PC_3-6 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Ndst4 | Neuron.Slc17a7.Bcl6-Ndst4 | Subiculum |
171 | PC_3-7 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Ptgfr | Neuron.Slc17a7.Bcl6-Ptgfr | Postsubiculum |
172 | PC_3-8 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Tshz2-Syt2 | Neuron.Slc17a7.Bcl6-Tshz2-Syt2 | Layer 5a, Entorhinal cortex, Tshz1+ |
173 | PC_3-9 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7 | Bcl6-Pvalb | Neuron.Slc17a7.Bcl6-Pvalb | Layer 5a |
174 | PC_4-1 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln | Cortical subplate interneuron |
175 | PC_4-2 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Cplx3-Npy | Neuron.Gad1Gad2.Cplx3-Npy | Cortical subplate interneuron |
176 | PC_4-3 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Cplx3-Egln3 | Neuron.Gad1Gad2.Cplx3-Egln3 | Cortical subplate interneuron |
177 | PC_4-4 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2-Slc17a8 | Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 |
178 | PC_4-5 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg |
179 | PC_4-6 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat |
180 | PC_4-7 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 |
181 | PC_4-8 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2-Chat | Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 |
182 | PC_4-9 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x |
183 | PC_5-1 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b |
184 | PC_5-2 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm |
185 | PC_5-3 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Pvalb-Cartpt | Neuron.Gad1Gad2.Pvalb-Cartpt | Neuron.Gad1Gad2.Pvalb-Cartpt |
186 | PC_5-4 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2-Th | Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 |
187 | PC_5-5 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Sst-Crh | Neuron.Gad1Gad2.Sst-Crh | Neuron.Gad1Gad2.Sst-Crh |
188 | PC_5-6 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn |
189 | PC_5-7 | Posterior Cortex | Neuron Posterior Cortex | Gad1Gad2 | Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 |
190 | PC_6-1 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Shisa8 | Neuron.Slc17a7-Slc17a6.Shisa8 | Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum) |
191 | PC_6-2 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Fos | Neuron.Slc17a7-Slc17a6.Tshz2-Fos | Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum) |
192 | PC_6-3 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Rasd1 | Neuron.Slc17a7-Slc17a6.Tshz2-Rasd1 | Presubiculum, Col5a2+ |
193 | PC_6-4 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Nnat | Neuron.Slc17a7-Slc17a6.Tshz2-Nnat | Presubiculum, Col5a2+ |
194 | PC_6-5 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Cabp7 | Neuron.Slc17a7-Slc17a6.Tshz2-Cabp7 | Retrosplenial areas, subiculum, presubiculum, Cabp7+ |
195 | PC_6-6 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Npnt | Neuron.Slc17a7-Slc17a6.Tshz2-Npnt | Retrosplenial areas, layer 5, Npnt+ |
196 | PC_6-7 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Prlr | Neuron.Slc17a7-Slc17a6.Tshz2-Prlr | Entorhinal cortex? |
197 | PC_7-1 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a8 | Fezf2-Slc17a8 | Neuron.Slc17a7-Slc17a8.Fezf2-Slc17a8 | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
198 | PC_7-2 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a6 | Fezf2-Htr2c | Neuron.Slc17a7-Slc17a6.Fezf2-Htr2c | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
199 | PC_7-3 | Posterior Cortex | Neuron Posterior Cortex | Slc17a7-Slc17a6 | Fezf2-3110035E14Rik | Neuron.Slc17a7-Slc17a6.Fezf2-3110035E14Rik | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
200 | ENT_7-1 | Entopeduncular nucleus & subthalamic nucleus | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Astrocyte.Gja1.Myoc |
201 | ENT_7-2 | Entopeduncular nucleus & subthalamic nucleus | Astrocyte | Gja1 | Htra1 | Astrocyte.Gja1.Htra1 | Astrocyte.Gja1.Htra1 |
202 | ENT_2-1 | Entopeduncular nucleus & subthalamic nucleus | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
203 | ENT_2-2 | Entopeduncular nucleus & subthalamic nucleus | Endothelial_Stalk | Flt1 | Vwf | Endothelial_Stalk.Flt1.Vwf | Endothelial_Stalk.Flt1.Vwf |
204 | ENT_2-3 | Entopeduncular nucleus & subthalamic nucleus | Endothelial_Stalk | Flt1 | Tgfb2 | Endothelial_Stalk.Flt1.Tgfb2 | Endothelial_Stalk.Flt1.Tgfb2 |
205 | ENT_2-4 | Entopeduncular nucleus & subthalamic nucleus | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
206 | ENT_3-2 | Entopeduncular nucleus & subthalamic nucleus | Endothelial_Tip | Dcn | Dcn | Endothelial_Tip.Dcn | Endothelial_Tip.Dcn |
207 | ENT_3-1 | Entopeduncular nucleus & subthalamic nucleus | Mural | Rgs5Acta2 | Kcnj8 | Mural.Rgs5Acta2.Kcnj8 | Mural.Rgs5Acta2.Kcnj8 |
208 | ENT_3-3 | Entopeduncular nucleus & subthalamic nucleus | Mural | Rgs5Acta2 | Pdgfa | Mural.Rgs5Acta2.Pdgfa | Mural.Rgs5Acta2.Pdgfa |
209 | ENT_3-4 | Entopeduncular nucleus & subthalamic nucleus | Mural | Rgs5Acta2 | Ccnd1 | Mural.Rgs5Acta2.Ccnd1 | Mural.Rgs5Acta2.Ccnd1 |
210 | ENT_3-5 | Entopeduncular nucleus & subthalamic nucleus | Mural | Rgs5Acta2 | Cnn1 | Mural.Rgs5Acta2.Cnn1 | Mural.Rgs5Acta2.Cnn1 |
211 | ENT_3-6 | Entopeduncular nucleus & subthalamic nucleus | Mural | Rgs5Acta2 | Junb | Mural.Rgs5Acta2.Junb | Mural, IEG+ |
212 | ENT_1-1 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Serpinb1a | Oligodendrocyte.Trf.Serpinb1a | Oligodendrocyte.Trf.Serpinb1a |
213 | ENT_1-2 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Klk6 | Oligodendrocyte.Trf.Klk6 | Oligodendrocyte.Trf.Klk6 |
214 | ENT_1-3 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Ndrg2 | Oligodendrocyte.Trf.Ndrg2 | Oligodendrocyte.Trf.Ndrg2 |
215 | ENT_1-4 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Il33 | Oligodendrocyte.Trf.Il33 | Oligodendrocyte.Trf.Il33 |
216 | ENT_1-5 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Ctps | Oligodendrocyte.Trf.Ctps | Oligodendrocyte.Trf.Ctps |
217 | ENT_8-1 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Cldn11 | Oligodendrocyte.Trf.Cldn11 | Oligodendrocyte.Trf.Cldn11 |
218 | ENT_8-2 | Entopeduncular nucleus & subthalamic nucleus | Oligodendrocyte | Trf | Ndrg2 | Oligodendrocyte.Trf.Ndrg2 | MyelinProcess |
219 | ENT_5-1 | Entopeduncular nucleus & subthalamic nucleus | Polydendrocyte | Tnr | Bmp4 | Polydendrocyte.Tnr.Bmp4 | Polydendrocyte.Tnr.Bmp4 |
220 | ENT_5-2 | Entopeduncular nucleus & subthalamic nucleus | Polydendrocyte | Tnr | Pdgfa | Polydendrocyte.Tnr.Pdgfa | Polydendrocyte.Tnr.Pdgfa |
221 | ENT_5-3 | Entopeduncular nucleus & subthalamic nucleus | Polydendrocyte | Tnr | Ctps | Polydendrocyte.Tnr.Ctps | Polydendrocyte.Tnr.Ctps |
222 | ENT_6-1 | Entopeduncular nucleus & subthalamic nucleus | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | NG2 cells |
223 | ENT_4-1 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Slc17a7 | Zbtb20 | Neuron.Slc17a7.Zbtb20 | Ventral Hippocampus |
224 | ENT_4-10 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pmch | Neuron.Gad1Gad2.Pmch | Lateral hypothalamus (LH) |
225 | ENT_4-11 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Otx2 | Neuron.Gad1Gad2.Otx2 | ventral lateral geniculate nucleus, magnocellular part (VLGMC)? |
226 | ENT_4-12 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2-Chat | Lhx8 | Neuron.Gad1Gad2-Chat | Nucleus basalis (NB) |
227 | ENT_4-2 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Six3-Pvalb | Neuron.Gad1Gad2.Six3-Pvalb | Thalamic reticular nucleus, TRN+ |
228 | ENT_4-3 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2-Slc17a6 | Cbln1 | Neuron.Gad1Gad2-Slc17a6.Cbln1 | Entopeduncular Nucleus (Ent), GABA/Glu co-releasing |
229 | ENT_4-4 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Dlk1 | Neuron.Gad1Gad2.Dlk1 | Zona Incerta, ventral part (ZIV) and/or Lateral hypothalamus (LH) |
230 | ENT_4-5 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Tcf7l2 | Neuron.Gad1Gad2.Tcf7l2 | Entopeduncular Nucleus (Ent) |
231 | ENT_4-6 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Slc17a6 | Pitx2 | Neuron.Slc17a6.Pitx2 | Subthalamic Nucleus (STN), maybe ENT as well |
232 | ENT_4-7 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb_Gfra2 | Neuron.Gad1Gad2.Pvalb-Gfra2 | Zona Incerta, ventral part (ZIV) |
233 | ENT_4-8 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb_Ntng1 | Neuron.Gad1Gad2.Pvalb-Ntng1 | Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal? |
234 | ENT_4-9 | Entopeduncular nucleus & subthalamic nucleus | Neuron Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb-Spp1 | Neuron.Gad1Gad2.Pvalb-Spp1 | Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal? |
235 | GP_5-1 | Globus pallidus externus & nucleus basalis | Astrocyte | Gja1 | Gfap | Astrocyte.Gja1.Gfap | Astrocyte.Gja1.Gfap |
236 | GP_5-2 | Globus pallidus externus & nucleus basalis | Astrocyte | Gja1 | Crym | Astrocyte.Gja1.Crym | Astrocyte.Gja1.Crym |
237 | GP_7-1 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Pi16 | Endothelial_Stalk.Flt1.Apold1 | Endothelial_Stalk.Flt1.Apold1 |
238 | GP_7-2 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Cdkn1c | Endothelial_Stalk.Flt1.Cdkn1c | Endothelial_Stalk.Flt1.Cdkn1c |
239 | GP_7-3 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Mgp | Endothelial_Stalk.Flt1.Mgp |
240 | GP_7-4 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Vwf | Endothelial_Stalk.Flt1.Lcn2 | Endothelial_Stalk.Flt1.Lcn2 |
241 | GP_7-5 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
242 | GP_7-6 | Globus pallidus externus & nucleus basalis | Endothelial_Stalk | Flt1 | Angpt2 | Endothelial_Stalk.Flt1.Angpt2 | Endothelial_Stalk.Flt1.Angpt2 |
243 | GP_9-1 | Globus pallidus externus & nucleus basalis | Endothelial_Tip | Dcn | Mgp | Endothelial_Tip.Dcn.Mgp | Endothelial_Tip.Dcn.Mgp |
244 | GP_9-2 | Globus pallidus externus & nucleus basalis | Endothelial_Tip | Dcn | Col15a1 | Endothelial_Tip.Dcn.Col15a1 | Endothelial_Tip.Dcn.Col15a1 |
245 | GP_9-3 | Globus pallidus externus & nucleus basalis | Endothelial_Tip | Dcn | Ifitm1 | Endothelial_Tip.Dcn.Ifitm1 | Endothelial_Tip.Dcn.Ifitm1 |
246 | GP_6-1 | Globus pallidus externus & nucleus basalis | Ependymal | Ccdc153 | Ccdc153 | Ependymal.Ccdc153 | Ependymal |
247 | GP_11-2 | Globus pallidus externus & nucleus basalis | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
248 | GP_11-1 | Globus pallidus externus & nucleus basalis | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
249 | GP_4-6 | Globus pallidus externus & nucleus basalis | Mitotic | MkI67 | Mitotic.MkI67 | Mitotic.MkI67 | |
250 | GP_8-1 | Globus pallidus externus & nucleus basalis | Mural | Rgs5Acta2 | Acta2 | Mural.Rgs5Acta2.Acta2 | Mural.Rgs5Acta2.Acta2 |
251 | GP_8-2 | Globus pallidus externus & nucleus basalis | Mural | Rgs5Acta2 | Kcnj8 | Mural.Rgs5Acta2.Kcnj8 | Mural.Rgs5Acta2.Kcnj8 |
252 | GP_8-3 | Globus pallidus externus & nucleus basalis | Mural | Rgs5Acta2 | Lmcd1 | Mural.Rgs5Acta2.Lmcd1 | Mural.Rgs5Acta2.Lmcd1 |
253 | GP_8-4 | Globus pallidus externus & nucleus basalis | Mural | Rgs5Acta2 | Rgs5 | Mural.Rgs5Acta2.Rgs5 | Mural.Rgs5Acta2.Rgs5 |
254 | GP_8-5 | Globus pallidus externus & nucleus basalis | Mural | Rgs5Acta2 | Pappa2 | Mural.Rgs5Acta2.Pappa2 | Mural.Rgs5Acta2.Pappa2 |
255 | GP_10-1 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Mbp | Oligodendrocyte.Trf.Mbp | Oligodendrocyte.Trf.Mbp |
256 | GP_10-2 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Klk6 | Oligodendrocyte.Trf.Klk6 | Oligodendrocyte.Trf.Klk6 |
257 | GP_10-3 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Ttyh1 | Oligodendrocyte.Trf.Ttyh1 | Oligodendrocyte.Trf.Ttyh1 |
258 | GP_10-4 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Ctps | Oligodendrocyte.Trf.Ctps | Oligodendrocyte.Trf.Ctps |
259 | GP_10-5 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Il33 | Oligodendrocyte.Trf.Il33 | Oligodendrocyte.Trf.Il33 |
260 | GP_10-6 | Globus pallidus externus & nucleus basalis | Oligodendrocyte | Trf | Kif5b | Oligodendrocyte.Trf.Kif5b | Oligodendrocyte.Trf.Kif5b |
261 | GP_4-1 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Pdgfa-Pik3r3 | Polydendrocyte.Tnr.Pdgfa-Pik3r3 | Polydendrocyte.Tnr.Pdgfa-Pik3r3 |
262 | GP_4-2 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Pdgfa-Tmem2 | Polydendrocyte.Tnr.Pdgfa-Tmem2 | Polydendrocyte.Tnr.Pdgfa-Tmem2 |
263 | GP_4-3 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Opalin | Polydendrocyte.Tnr.Opalin | Polydendrocyte.Tnr.Opalin |
264 | GP_4-4 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Bmp4 | Polydendrocyte.Tnr.Bmp4 | Polydendrocyte.Tnr.Bmp4 |
265 | GP_4-5 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
266 | GP_4-7 | Globus pallidus externus & nucleus basalis | Polydendrocyte | Tnr | Cyth3 | Polydendrocyte.Tnr.Cyth3 | Polydendrocyte.Tnr.Cyth3 |
267 | GP_1-1 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Chat-Gad1Gad2-Slc17a8 | Ngfr | Neuron.Chat-Gad1Gad2-Slc17a8.Ngfr | Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic |
268 | GP_1-2 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Chat-Gad1Gad2-Slc17a8 | Nefm | Neuron.Chat-Gad1Gad2-Slc17a8.Nefm | Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic |
269 | GP_2-1 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Tac1 | Neuron.Gad1Gad2.Tac1 | Substantia Innominata (SI) |
270 | GP_2-10 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cadm2 | Neuron.Gad1Gad2.Cadm2 | Cadm2+ state |
271 | GP_2-11 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Slc17a7 | Neurod2.Rorb | Neuron.Slc17a7.Neurod2-Rorb | Nucleus of the lateral olfactory tract (LOT) |
272 | GP_2-12 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Slc17a7 | Neurod2.C1ql3 | Neuron.Slc17a7.Neurod2-C1ql3 | Nucleus of the lateral olfactory tract (LOT) |
273 | GP_2-13 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Grem | Neuron.Gad1Gad2.Grem | Globus Pallidus Externus (GP), Lhx6-enriched |
274 | GP_2-14 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Pvalb | Neuron.Gad1Gad2.Scn4b | Globus Pallidus Externus (GP), “Prototypical” |
275 | GP_2-15 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Fibcd1 | Neuron.Gad1Gad2.Fibcd1 | ventral GP (vGP) |
276 | GP_2-16 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Trdn | Neuron.Gad1Gad2.Trdn | Ventral Globus Pallidus Externus (vGP) / Ventral Pallidum (VP) / magnocellular preoptic nucleus (MCPO) |
277 | GP_2-17 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Elfn1-Grik3 | Neuron.Gad1Gad2.Elfn1-Grik3 | Globus Pallidus Externus (GP) |
278 | GP_2-18 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Pappa | Neuron.Gad1Gad2.Pappa | ventral GP (vGP) |
279 | GP_2-19 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cyp26b1 | Neuron.Gad1Gad2.Cyp26b1 | Globus Pallidus Externus (GP), “Arkypallidal” |
280 | GP_2-2 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Slc17a6 | Cck | Neuron.Slc17a6.Cck | Substantia Innominata (SI) |
281 | GP_2-20 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Six3-Pvalb | Neuron.Gad1Gad2.Six3-Pvalb | Thalamic reticular nucleus (TRN) |
282 | GP_2-21 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Vip | Neuron.Gad1Gad2.Vip | ventral GP (vGP) |
283 | GP_2-22 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cplx3 | Neuron.Gad1Gad2.Lamp5-Cplx3 | Substantia Innominata (SI) |
284 | GP_2-23 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Trh | Neuron.Gad1Gad2.Trh | Substantia Innominata (SI) |
285 | GP_2-24 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Igfbp4.Rgs4 | Neuron.Gad1Gad2.Igfbp4.Rgs4 | Striatum, interneuron |
286 | GP_2-25 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Igfbp4.Adora1 | Neuron.Gad1Gad2.Igfbp4.Adora1 | Striatum, interneuron |
287 | GP_2-3 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Tac2 | Neuron.Gad1Gad2.Tac2 | Substantia Innominata (SI), dorsal, bordering GP |
288 | GP_2-4 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Hpcal4 | Neuron.Gad1Gad2.Hpcal4 | Substantia Innominata (SI) |
289 | GP_2-5 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sst | Neuron.Gad1Gad2.Sst | Striatum, interneuron |
290 | GP_2-6 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Satb1 | Neuron.Gad1Gad2.Satb1 | Substantia Innominata (SI) |
291 | GP_2-7 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2-Slc17a6 | Cbln1 | Neuron.Gad1Gad2-Slc17a6.Cbln1 | Entopeduncular Nucleus (Ent), GABA/Glu co-releasing |
292 | GP_2-8 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Slc17a6 | Tcf7l2 | Neuron.Slc17a6.Tcf7l2 | Substantia Innominata (SI) |
293 | GP_2-9 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Slc17a6 | Rspo3 | Neuron.Slc17a6.Rspo3 | Substantia Innominata (SI) |
294 | GP_3-1 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Nefm | Neuron.Gad1Gad2.Drd1-Nefm | Striatum, dSPNs, neurofilament state+ |
295 | GP_3-10 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Vipr2 | Neuron.Gad1Gad2.Vipr2 | central amygdaloid nucleus, medial division, anterodorsal part (CeMAD) |
296 | GP_3-2 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Pdyn | Neuron.Gad1Gad2.Drd1-Pdyn | Striatum, patch dSPNs |
297 | GP_3-3 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Adora2a | Neuron.Gad1Gad2.Adora2a | Striatum, iSPNs |
298 | GP_3-4 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cadm2 | Neuron.Gad1Gad2.Cadm2 | Striatum, Cadm state SPNs |
299 | GP_3-5 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Pde1c | Neuron.Gad1Gad2.Drd1-Pde1c | Striatum, dSPNs, Pde1c + |
300 | GP_3-6 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Adora2a-Pde1c | Neuron.Gad1Gad2.Adora2a-Pde1c | Striatum, iSPNs, Pde1c + |
301 | GP_3-7 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sphkap-Tmem255a | Neuron.Gad1Gad2.Sphkap-Tmem255a | Basomedial amygdaloid nucleus (BMA) |
302 | GP_3-8 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sphkap-Cpne4 | Neuron.Gad1Gad2.Sphkap-Cpne4 | Basomedial amygdaloid nucleus (BMA) |
303 | GP_3-9 | Globus pallidus externus & nucleus basalis | Neuron Globus pallidus externus & nucleus basalis | Gad1Gad2-Th | Adora2a-Th | Neuron.Gad1Gad2-Th.Adora2a-Th | Striatum, Th+ SPN |
304 | HC_7-1 | Hippocampus | Astrocyte | Gja1 | Nnat | Astrocyte.Gja1.Nnat | Astrocyte.Gja1.Nnat |
305 | HC_7-2 | Hippocampus | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Astrocyte.Gja1.Myoc |
306 | HC_7-3 | Hippocampus | Astrocyte | Gja1 | Fabp7 | Astrocyte.Gja1.Fabp7 | Astrocyte.Gja1.Fabp7 |
307 | HC_12-1 | Hippocampus | Choroid_Plexus | Ttr | Ttr | Choroid_Plexus.Ttr | Choroid_Plexus.Ttr |
308 | HC_15-1 | Hippocampus | Endothelial_Stalk | Flt1 | Cdkn2b | Endothelial_Stalk.Flt1.Cdkn2b | Endothelial_Stalk.Flt1.Cdkn2b |
309 | HC_15-2 | Hippocampus | Endothelial_Stalk | Flt1 | Lcn2 | Endothelial_Stalk.Flt1.Lcn2 | Endothelial_Stalk.Flt1.Lcn2 |
310 | HC_17-1 | Hippocampus | Endothelial_Tip | Dcn | Rbp4 | Endothelial_Tip.Dcn.Rbp4 | Endothelial_Tip.Dcn.Rbp4 |
311 | HC_17-2 | Hippocampus | Endothelial_Tip | Dcn | Agt | Endothelial_Tip.Dcn.Agt | Endothelial_Tip.Dcn.Agt |
312 | HC_17-3 | Hippocampus | Endothelial_Tip | Dcn | Mgp | Endothelial_Tip.Dcn.Mgp | Endothelial_Tip.Dcn.Mgp |
313 | HC_17-4 | Hippocampus | Endothelial_Tip | Dcn | Il33 | Endothelial_Tip.Dcn.Il33 | Endothelial_Tip.Dcn.Il33 |
314 | HC_11-1 | Hippocampus | Ependymal | Ccdc153 | NA | Ependymal.Ccdc153 | Ependymal.Ccdc153 |
315 | HC_10-2 | Hippocampus | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
316 | HC_10-1 | Hippocampus | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
317 | HC_16-1 | Hippocampus | Mural | Rgs5Acta2 | Cnn1 | Mural.Rgs5Acta2.Cnn1 | Mural.Rgs5Acta2.Cnn1 |
318 | HC_16-2 | Hippocampus | Mural | Rgs5Acta2 | Ccnd1 | Mural.Rgs5Acta2.Ccnd1 | Mural.Rgs5Acta2.Ccnd1 |
319 | HC_16-3 | Hippocampus | Mural | Rgs5Acta2 | Kcnj8 | Mural.Rgs5Acta2.Kcnj8 | Mural.Rgs5Acta2.Kcnj8 |
320 | HC_16-4 | Hippocampus | Mural | Rgs5Acta2 | Col3a1 | Mural.Rgs5Acta2.Col3a1 | Mural.Rgs5Acta2.Col3a1 |
321 | HC_13-1 | Hippocampus | Neurogenesis | Sox4 | Efhd2 | Neurogenesis.Sox4.Efhd2 | Neurogenesis (SGZ) |
322 | HC_13-2 | Hippocampus | Neurogenesis | Sox4 | Hist1h2al | Neurogenesis.Sox4.Hist1h2al | Neurogenesis (SGZ) |
323 | HC_13-3 | Hippocampus | Neurogenesis | Sox4 | Cdc20 | Neurogenesis.Sox4.Cdc20 | Neurogenesis (SGZ) |
324 | HC_13-4 | Hippocampus | Neurogenesis | Sox4 | Gad2 | Neurogenesis.Sox4.Gad2 | Neurogenesis (SGZ) |
325 | HC_13-5 | Hippocampus | Neurogenesis | Sox4 | Gabra5 | Neurogenesis.Sox4.Gabra5 | Neurogenesis (SGZ) |
326 | HC_13-6 | Hippocampus | Neurogenesis | Sox4 | Ppp2r2b | Neurogenesis.Sox4.Ppp2r2b | Neurogenesis (SGZ) |
327 | HC_8-1 | Hippocampus | Oligodendrocyte | Trf | Plin3 | Oligodendrocyte.Trf.Plin3 | Oligodendrocyte.Trf.Plin3 |
328 | HC_8-2 | Hippocampus | Oligodendrocyte | Trf | Ndrg2 | Oligodendrocyte.Trf.Ndrg2 | MyelinProcesses |
329 | HC_8-3 | Hippocampus | Oligodendrocyte | Trf | Il33 | Oligodendrocyte.Trf.Il33 | Oligodendrocyte.Trf.Il33 |
330 | HC_8-4 | Hippocampus | Oligodendrocyte | Trf | Man1a | Oligodendrocyte.Trf.Man1a | Oligodendrocyte.Trf.Man1a |
331 | HC_8-5 | Hippocampus | Oligodendrocyte | Trf | Ctps | Oligodendrocyte.Trf.Ctps | Oligodendrocyte.Trf.Ctps |
332 | HC_9-1 | Hippocampus | Polydendrocyte | Tnr | Pdgfa | Polydendrocyte.Tnr.Pdgfa | Polydendrocyte.Tnr.Pdgfa |
333 | HC_9-2 | Hippocampus | Polydendrocyte | Tnr | Bmp4 | Polydendrocyte.Tnr.Bmp4 | Polydendrocyte.Tnr.Bmp4 |
334 | HC_9-3 | Hippocampus | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
335 | HC_9-4 | Hippocampus | Polydendrocyte | Tnr | Ptprz1 | Polydendrocyte.Tnr.Ptprz1 | Polydendrocyte.Tnr.Ptprz1 |
336 | HC_1-1 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Pvalb | C1ql1 | Neuron.Gad1Gad2_Pvalb.C1ql1 | Interneuron, Chandelier |
337 | HC_1-10 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Sst | Pcdh11x | Neuron.Gad1Gad2_Sst.Pcdh11x | Interneuron, OLM4 (Dentate enriched?) |
338 | HC_1-11 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Cplx3 | Rxfp1 | Gad1Gad2_Cplx3.Rxfp1 | Interneuron, CA1 lacunosum moleculare1? |
339 | HC_1-12 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Cplx3 | Tox | Gad1Gad2_Cplx3.Tox | Interneuron, lacunosum oriens1? |
340 | HC_1-13 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Id2 | Tac1 | Gad1Gad2_Id2.Tac1 | Interneuron, Neurogliaform1 |
341 | HC_1-14 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Id2 | Bcl11b | Gad1Gad2_Id2.Bcl11b | Interneuron, Neurogliaform2 |
342 | HC_1-15 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Id2 | Prlr | Gad1Gad2_Id2.Prlr | Interneuron, Neurogliaform3 |
343 | HC_1-16 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Nnat | Gad1Gad2_Htr3a.Nnat | Interneuron, (candidate CGE-derived 1) |
344 | HC_1-17 | Hippocampus | Neuron Hippocampus | Gad1Gad2Chat_Htr3a | Chat | Gad1Gad2Chat_Htr3a.Chat | Interneuron, Cholinergic (candidate CGE-derived 2) |
345 | HC_1-18 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Phlda1 | Gad1Gad2_Htr3a.Phlda1 | Interneuron, (candidate CGE-derived 3) |
346 | HC_1-19 | Hippocampus | Neuron Hippocampus | Gad1Gad2Slc17a8_Htr3a | Efna5 | Gad1Gad2_Htr3a.Efba5 | Interneuron, (candidate CGE-derived 4) |
347 | HC_1-2 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Id2 | Sfrp2 | Neuron.Gad1Gad2_Id2.Sfrp2 | Interneuron, Neurogliaform1 |
348 | HC_1-20 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Cpne5 | Gad1Gad2_Htr3a.Cpne5 | Interneuron, (candidate CGE-derived 5) |
349 | HC_1-21 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Ecel1 | Gad1Gad2_Htr3a.Ecel1 | Interneuron, (candidate CGE-derived 6) |
350 | HC_1-22 | Hippocampus | Neuron Hippocampus | Gad1Gad2Slc17a8_Htr3a | Ibsp | Gad1Gad2_Htr3a.Ibsp | Interneuron, (candidate CGE-derived 7) |
351 | HC_1-23 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Krt73 | Gad1Gad2_Htr3a.Krt73 | Interneuron, (candidate CGE-derived 8) |
352 | HC_1-24 | Hippocampus | Neuron Hippocampus | Gad1Gad2Slc17a8_Htr3a | Kctd12 | Gad1Gad2Slc17a8_Htr3a.Ktcd12 | Interneuron, GABA/Glutamate co-releasing? (candidate CGE-derived 9) |
353 | HC_1-25 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Chrm2 | Gad1Gad2_Htr3a.Chrm2 | Interneuron, (candidate CGE-derived 10) |
354 | HC_1-26 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Htr1b | Gad1Gad2_Htr3a.Htr1b | Interneuron, (candidate CGE-derived 11) |
355 | HC_1-27 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Htr3a | Sema3c | Gad1Gad2_Htr3a.Sema3c | Interneuron, (candidate CGE-derived 12) |
356 | HC_1-3 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Sst | Atp2b4 | Neuron.Gad1Gad2_Sst.Atp2b4 | Interneuron, Olm |
357 | HC_1-4 | Hippocampus | Neuron Hippocampus | Gad1Gad2Slc17a8_Sst | Slc17a8 | Neuron.Gad1Gad2Slc17a8_Sst.Ncam2 | Interneuron, GABA/Glutamate co-releasing? |
358 | HC_1-5 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Sst | Spon1 | Neuron.Gad1Gad2_Sst.Spon1 | Interneuron, OLM1 |
359 | HC_1-6 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Pvalb | Tac1 | Neuron.Gad1Gad2_Pvalb.Tac1 | Interneuron, Basket 1 |
360 | HC_1-7 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Pvalb | Gfra1 | Neuron.Gad1Gad2_Pvalb.Gfra1 | Interneuron, Basket 1 |
361 | HC_1-8 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Sst | Rbp4 | Neuron.Gad1Gad2_Sst.Rbp4 | Interneuron, OLM2 (CA1 enriched?) |
362 | HC_1-9 | Hippocampus | Neuron Hippocampus | Gad1Gad2_Sst | Grm1 | Neuron.Gad1Gad2_Sst.Grm1 | Interneuron, OLM3 (CA1 enriched?) |
363 | HC_14-1 | Hippocampus | Neuron Hippocampus | Slc17a6 | Lhx1 | Neuron.Slc17a6.Lhx1 | Cajal-retzius |
364 | HC_2-1 | Hippocampus | Neuron Hippocampus | Slc17a7 | Cbln4 | Neuron.Slc17a7.Cbln4 | Neuron.Slc17a7.Cbln4 |
365 | HC_2-2 | Hippocampus | Neuron Hippocampus | Slc17a6 | Htr1a | Neuron.Slc17a6.Htr1a | Neuron.Slc17a6.Htr1a |
366 | HC_2-3 | Hippocampus | Neuron Hippocampus | Slc17a6 | Nts | Neuron.Slc17a6.Nts | Neuron.Slc17a6.Nts |
367 | HC_2-4 | Hippocampus | Neuron Hippocampus | Slc17a6 | Nnat | Neuron.Slc17a6.Nnat | Neuron.Slc17a6.Nnat |
368 | HC_2-5 | Hippocampus | Neuron Hippocampus | Slc17a6 | Nell1 | Neuron.Slc17a6.Nell1 | Neuron.Slc17a6.Nell1 |
369 | HC_2-6 | Hippocampus | Neuron Hippocampus | Slc17a6 | Nefm | Neuron.Slc17a6.Nefm | Neuron.Slc17a6.Nefm |
370 | HC_2-7 | Hippocampus | Neuron Hippocampus | Slc17a6 | Grp | Neuron.Slc17a6.Grp | Neuron.Slc17a6.Grp |
371 | HC_3-1 | Hippocampus | Neuron Hippocampus | Slc17a7-Slc17a6 | Nxph3-Nts | Neuron.Slc17a7-Slc17a6.Nxph3-Nts | Subiculum |
372 | HC_3-10 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Sema3c | Neuron.Slc17a7.Nxph3-Sema3c | Entorhinal cortex |
373 | HC_3-11 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Ajap1 | Neuron.Slc17a7.Nxph3-Ajap1 | Entorhinal cortex |
374 | HC_3-2 | Hippocampus | Neuron Hippocampus | Slc17a7-Slc17a6 | Nxph3-Cbln2-Htr2c | Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Htr2c | Deep layer subiculum |
375 | HC_3-3 | Hippocampus | Neuron Hippocampus | Slc17a7-Slc17a6 | Nxph3-Cbln2-Kcnh8 | Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Kcnh8 | Deep layer subiculum |
376 | HC_3-4 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Hpcal1-Tpbg | Neuron.Slc17a7.Nxph3-Hpcal1-Tpbg | Entorhinal cortex |
377 | HC_3-5 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Hpcal1-Fos | Neuron.Slc17a7.Nxph3-Hpcal1-Fos | Entorhinal cortex (IEG) |
378 | HC_3-6 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Hpcal-Igfbp4 | Neuron.Slc17a7.Nxph3-Hpcal-Igfbp4 | Entorhinal cortex |
379 | HC_3-7 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Hpcal-Krt12 | Neuron.Slc17a7.Nxph3-Hpcal-Krt12 | Entorhinal cortex |
380 | HC_3-8 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Cplx3-Hs6st2 | Neuron.Slc17a7.Nxph3-Cplx3-Hs6st2 | Entorhinal cortex |
381 | HC_3-9 | Hippocampus | Neuron Hippocampus | Slc17a7 | Nxph3-Cplx3-Pappa2 | Neuron.Slc17a7.Nxph3-Cplx3-Pappa2 | Entorhinal cortex |
382 | HC_4-1 | Hippocampus | Neuron Hippocampus | Slc17a7 | C1ql2-Cck | Neuron.Slc17a7.C1ql2-Cck | Dentate Principal cells |
383 | HC_4-2 | Hippocampus | Neuron Hippocampus | Slc17a7 | C1ql2-Penk | Neuron.Slc17a7.C1ql2-Penk | Dentate Principal cells |
384 | HC_5-1 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Lypd1 | Neuron.Slc17a7.Fibcd1-Lypd1 | CA1 Principal cells (Anterior) |
385 | HC_5-10 | Hippocampus | Neuron Hippocampus | Slc17a7 | Cbln1-Reln | Neuron.Slc17a7.Reln | Medial entorrhinal cortexm, Reln+/Cbln1+ |
386 | HC_5-11 | Hippocampus | Neuron Hippocampus | Slc17a7 | Cbln1-Gpr88 | Neuron.Slc17a7.Cbln1-Gpr88 | Medial entorrhinal cortex |
387 | HC_5-12 | Hippocampus | Neuron Hippocampus | Slc17a7 | Cbln1-Trps1 | Neuron.Slc17a7.Cbln1-Trps1 | Medial entorrhinal cortex, Cbln1+/Trps1+ |
388 | HC_5-13 | Hippocampus | Neuron Hippocampus | Slc17a7 | Ptgfr | Neuron.Slc17a7.Ptgfr | Postsubiculum |
389 | HC_5-14 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fezf2 | Neuron.Slc17a7.Fezf2-Efna5 | Subiculum |
390 | HC_5-15 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fezf2-Rxfp1 | Neuron.Slc17a7.Fezf2-Rxfp1 | Subiculum |
391 | HC_5-2 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Nrip3 | Neuron.Slc17a7.Fibcd1-Nrip3 | CA1 Principal cells |
392 | HC_5-3 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Nptx2 | Neuron.Slc17a7.Fibcd1-Nptx2 | CA1 Principal cells |
393 | HC_5-4 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Kitl | Neuron.Slc17a7.Fibcd1-Kitl | CA1 Principal cells |
394 | HC_5-5 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Grm5 | Neuron.Slc17a7.Fibcd1-Grm5 | CA1 Principal cells |
395 | HC_5-6 | Hippocampus | Neuron Hippocampus | Slc17a7 | Dcn-Pou3f1 | Neuron.Slc17a7.Dcn-Pou3f1 | Anterior Subiculum, proximal to CA1 |
396 | HC_5-7 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Inhba | Neuron.Slc17a7.FIbcd1-Inhba | CA1 Principal cells |
397 | HC_5-8 | Hippocampus | Neuron Hippocampus | Slc17a7 | Fibcd1-Fos | Neuron.Slc17a7.Fibcd1-Fos | CA1 Principal cells |
398 | HC_5-9 | Hippocampus | Neuron Hippocampus | Slc17a7 | Dcn-Camk2d | Neuron.Slc17a7.Dcn-Camk2d | CA1 Principal cells |
399 | HC_6-1 | Hippocampus | Neuron Hippocampus | Slc17a7 | Pvrl3-Nos1 | Neuron.Slc17a7.Pvrl3-Nos1 | CA3 Principal cells |
400 | HC_6-2 | Hippocampus | Neuron Hippocampus | Slc17a7 | Pvrl3-Grm5 | Neuron.Slc17a7.Pvrl3-Grm5 | CA3 Principal cells |
401 | HC_6-3 | Hippocampus | Neuron Hippocampus | Slc17a7 | Pvrl3-St18 | Neuron.Slc17a7.Pvrl3-St18 | Lateral CA3 Principal cells |
402 | HC_6-4 | Hippocampus | Neuron Hippocampus | Slc17a7 | Rgs14 | Neuron.Slc17a7.Rgs14 | CA2 Principal cells |
403 | HC_6-5 | Hippocampus | Neuron Hippocampus | Slc17a7 | Calb2-Vgll3 | Neuron.Slc17a7.Calb2-Vgll3 | Dentate hilum? |
404 | HC_6-6 | Hippocampus | Neuron Hippocampus | Slc17a7 | Calb2-Adcyap1 | Neuron.Slc17a7.Calb2-Adcyap1 | Dentate hilum? |
405 | HC_6-7 | Hippocampus | Neuron Hippocampus | Slc17a7 | Pvrl3-Inhba | Neuron.Slc17a7.Pvrl3-Inhba | CA3 Principal cells |
406 | HC_6-8 | Hippocampus | Neuron Hippocampus | Slc17a7 | Pvrl3-Fos | Neuron.Slc17a7.Pvrl3-Fos | CA3 Principal cells |
407 | STR_4-1 | Striatum | Astrocyte | Gja1 | Htra1 | Astrocyte.Gja1.Htra1 | Astrocyte.Gja1.Htra1 |
408 | STR_4-2 | Striatum | Astrocyte | Gja1 | Sparc-Car2 | Astrocyte.Gja1.Sparc-Car2 | Astrocyte.Gja1.Sparc-Car2 |
409 | STR_4-3 | Striatum | Astrocyte | Gja1 | Notum | Astrocyte.Gja1.Notum | Astrocyte.Gja1.Notum |
410 | STR_7-1 | Striatum | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
411 | STR_7-2 | Striatum | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
412 | STR_9-1 | Striatum | Endothelial_Tip | Dcn | Dcn | Endothelial_Tip.Dcn | Endothelial_Tip.Dcn |
413 | STR_1-1 | Striatum | Ependymal | Ccdc153 | Ccdc153 | Ependyma_Ccdc153.Ccdc153 | Ependyma_Ccdc153.Ccdc153 |
414 | STR_6-1 | Striatum | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
415 | STR_6-2 | Striatum | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
416 | STR_8-1 | Striatum | Mural | Rgs5Acta2 | Olfr558 | Mural.Rgs5Acta2.Olfr558 | Mural.Rgs5Acta2.Olfr558 |
417 | STR_8-2 | Striatum | Mural | Rgs5Acta2 | Cnn1 | Mural.Rgs5Acta2.Cnn1 | Mural.Rgs5Acta2.Cnn1 |
418 | STR_8-3 | Striatum | Mural | Rgs5Acta2 | Ccnd1 | Mural.Rgs5Acta2.Ccnd1 | Mural.Rgs5Acta2.Ccnd1 |
419 | STR_8-4 | Striatum | Mural | Rgs5Acta2 | Kcnj8 | Mural.Rgs5Acta2.Kcnj8 | Mural.Rgs5Acta2.Kcnj8 |
420 | STR_8-5 | Striatum | Mural | Rgs5Acta2 | Col3a1 | Mural.Rgs5Acta2.Col3a1 | Mural.Rgs5Acta2.Col3a1 |
421 | STR_2-1 | Striatum | Neurogenesis | Sox4 | Ung | Neurogenesis.Sox4.Ung | RostralÊmigratory streamÊ(RMS) |
422 | STR_2-2 | Striatum | Neurogenesis | Sox4 | Stmn2 | Neurogenesis.Sox4.Stmn2 | RostralÊmigratory streamÊ(RMS) |
423 | STR_2-3 | Striatum | Neurogenesis | Sox4 | Tuba1c | Neurogenesis.Sox4.Tuba1c | RostralÊmigratory streamÊ(RMS) |
424 | STR_2-4 | Striatum | Neurogenesis | Sox4 | Stmn2-Csrp2 | Neurogenesis.Sox4.Stmn2-Csrp2 | RostralÊmigratory streamÊ(RMS) |
425 | STR_2-5 | Striatum | Neurogenesis | Sox4 | Hist1h2al | Neurogenesis.Sox4.Hist1h2al | RostralÊmigratory streamÊ(RMS) |
426 | STR_2-6 | Striatum | Neurogenesis | Sox4 | Notum | Neurogenesis.Sox4.Notum | RostralÊmigratory streamÊ(RMS) |
427 | STR_3-1 | Striatum | Oligodendrocyte | Trf | Klk6 | Oligodendrocyte.Trf.Klk6 | Oligodendrocyte.Trf.Klk6 |
428 | STR_3-2 | Striatum | Oligodendrocyte | Trf | Il33 | Oligodendrocyte.Trf.Il33 | Oligodendrocyte.Trf.Il33 |
429 | STR_3-3 | Striatum | Oligodendrocyte | Trf | Ctps | Oligodendrocyte.Trf.Ctps | Oligodendrocyte.Trf.Ctps |
430 | STR_5-1 | Striatum | Polydendrocyte | Tnr | Cspg5 | Polydendrocye.Tnr.Cspg5 | Polydendrocye.Tnr.Cspg5 |
431 | STR_5-2 | Striatum | Polydendrocyte | Tnr | Bmp4 | Polydendrocye.Tnr.Bmp4 | Polydendrocye.Tnr.Bmp4 |
432 | STR_5-3 | Striatum | Polydendrocyte | Tnr | Pdgfa | Polydendrocye.Tnr.Pdgfa | Polydendrocye.Tnr.Pdgfa |
433 | STR_5-4 | Striatum | Polydendrocyte | Tnr | Ctps | Polydendrocye.Tnr.Ctps | Polydendrocye.Tnr.Ctps |
434 | STR_10-1 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Fos | Neuron.Gad1Gad2.Drd1-Fos | dSPN, IEG+ |
435 | STR_10-2 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Lypd1 | Neuron.Gad1Gad2.Drd1-Lypd1 | dSPN, patch |
436 | STR_10-3 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Pde1a | Neuron.Gad1Gad2.Drd1-Pde1a | dSPN |
437 | STR_10-4 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Nefm | Neuron.Gad1Gad2.Drd1-Nefm | dSPN |
438 | STR_10-5 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Cxcl14 | Neuron.Gad1Gad2.Drd1-Cxcl14 | dSPN, lateral striatum |
439 | STR_11-1 | Striatum | Neuron Striatum | Gad1Gad2 | Adora2a-Nefm | Neuron.Gad1Gad2.Adora2a-Nefm | iSPN |
440 | STR_11-2 | Striatum | Neuron Striatum | Gad1Gad2 | Adora2a-Nnat | Neuron.Gad1Gad2.Adora2a-Nnat | iSPN |
441 | STR_11-3 | Striatum | Neuron Striatum | Gad1Gad2 | Adora2a-Fos | Neuron.Gad1Gad2.Adora2a-Fos | iSPN, IEG+ |
442 | STR_12-1 | Striatum | Neuron Striatum | Gad1Gad2-Chat-Slc17a8 | Chat | Neuron.Gad1Gad2-Chat-Slc17a8.Chat | cholinergic interneuron |
443 | STR_13-1 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Tpbg | Neuron.Gad1Gad2.Drd1-Tpbg | eccentric SPN, dSPN-like markers |
444 | STR_13-10 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Nfib | Neuron.Gad1Gad2.Drd1-Nfib | Amygdala |
445 | STR_13-11 | Striatum | Neuron Striatum | Gad1Gad2 | Sgol2a | Neuron.Gad1Gad2.Sgol2a | Very small cluster |
446 | STR_13-2 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Otof | Neuron.Gad1Gad2.Drd1-Otof-Sorcs1 | eccentric SPN, dSPN-like markers |
447 | STR_13-3 | Striatum | Neuron Striatum | Gad1Gad2 | Drd1-Otof | Neuron.Gad1Gad2.Drd1-Otof-Lmo2 | eccentric SPN, dSPN-like markers |
448 | STR_13-4 | Striatum | Neuron Striatum | Gad1Gad2 | Adora2a-Otof | Neuron.Gad1Gad2.Adora2a-Otof | eccentric SPN, iSPN-like markers |
449 | STR_13-5 | Striatum | Neuron Striatum | Gad1Gad2 | Adora2a-Th | Neuron.Gad1Gad2.Adora2a-Th | eccentric SPN, iSPN-like markers, Th+ |
450 | STR_13-6 | Striatum | Neuron Striatum | Slc17a6 | Oprk1 | Neuron.Slc17a6.Oprk1 | Claustrum cortex |
451 | STR_13-7 | Striatum | Neuron Striatum | Slc17a7 | Cplx3 | Neuron.Slc17a7.Cplx3 | Cortical subplate |
452 | STR_13-8 | Striatum | Neuron Striatum | Slc17a7 | Dkk3 | Neuron.Slc17a7.Dkk3 | Deep layer cortex |
453 | STR_13-9 | Striatum | Neuron Striatum | Gad1Gad2 | Resp18 | Neuron.Gad1Gad2.Resp18 | Bed nucleus of the stria terminalis (BNST) |
454 | STR_14-1 | Striatum | Neuron Striatum | Gad1Gad2 | Pvalb-Megf11 | Neuron.Gad1Gad2_Pvalb.Pvalb-Megf11 | Fast-spiking interneuron, Pvalb+ |
455 | STR_14-2 | Striatum | Neuron Striatum | Gad1Gad2 | Pnoc | Neuron.Gad1Gad2.Pnoc | Fast-spiking interneuron, Pvalb+/Pnoc+ |
456 | STR_14-3 | Striatum | Neuron Striatum | Gad1Gad2 | Pvalb-Rgs12 | Neuron.Gad1Gad2.Pvalb-Rgs12 | Fast-spiking interneuron, Pvalb+/Rgs12+ |
457 | STR_14-4 | Striatum | Neuron Striatum | Gad1Gad2-Th | Trh | Neuron.Gad1Gad2-Th.Trh | Th+ interneuron |
458 | STR_15-1 | Striatum | Neuron Striatum | Gad1Gad2 | Chodl | Neuron.Gad1Gad2.Chodl | Low-threshold spiking interneuron, Npy+/Sst+ |
459 | SN_7-1 | Substantia nigra & Ventral tegmental area | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Astrocyte.Gja1.Myoc |
460 | SN_7-2 | Substantia nigra & Ventral tegmental area | Astrocyte | Gja1 | Cst3 | Astrocyte.Gja1.Cst3 | Astrocyte.Gja1.Cst3 |
461 | SN_7-3 | Substantia nigra & Ventral tegmental area | Astrocyte | Gja1 | Igfbp2 | Astrocyte.Gja1.Igfbp2 | Astrocyte.Gja1.Igfbp2 |
462 | SN_12-1 | Substantia nigra & Ventral tegmental area | Endothelial_Stalk | Flt1 | Cdkn1c | Endothelial_Stalk.Flt1.Cdkn1c | Endothelial_Stalk.Flt1.Cdkn1c |
463 | SN_12-2 | Substantia nigra & Ventral tegmental area | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
464 | SN_12-3 | Substantia nigra & Ventral tegmental area | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
465 | SN_12-4 | Substantia nigra & Ventral tegmental area | Endothelial_Stalk | Flt1 | Vwf | Endothelial_Stalk.Flt1.Vwf | Endothelial_Stalk.Flt1.Vwf |
466 | SN_14-1 | Substantia nigra & Ventral tegmental area | Endothelial_Tip | Dcn | Mgp | Endothelial_Tip.Dcn.Mgp | Endothelial_Tip.Dcn.Mgp |
467 | SN_14-2 | Substantia nigra & Ventral tegmental area | Endothelial_Tip | Dcn | Ifitm1 | Endothelial_Tip.Dcn.Ifitm1 | Endothelial_Tip.Dcn.Ifitm1 |
468 | SN_14-3 | Substantia nigra & Ventral tegmental area | Endothelial_Tip | Dcn | Alcam | Endothelial_Tip.Dcn.Alcam | Endothelial_Tip.Dcn.Alcam |
469 | SN_8-1 | Substantia nigra & Ventral tegmental area | Ependymal | Ccdc153 | Ccdc153 | Ependyma.Ccdc153 | Ependyma.Ccdc153 |
470 | SN_9-1 | Substantia nigra & Ventral tegmental area | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
471 | SN_9-2 | Substantia nigra & Ventral tegmental area | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
472 | SN_13-1 | Substantia nigra & Ventral tegmental area | Mural | Rgs5Acta2 | Rgs5 | Mural.Rgs5Acta2.Rgs5 | Mural.Rgs5Acta2.Rgs5 |
473 | SN_13-2 | Substantia nigra & Ventral tegmental area | Mural | Rgs5Acta2 | Kcnj8 | Mural.Rgs5Acta2.Kcnj8 | Mural.Rgs5Acta2.Kcnj8 |
474 | SN_13-3 | Substantia nigra & Ventral tegmental area | Mural | Rgs5Acta2 | Cd9 | Mural.Rgs5Acta2.Cd9 | Mural.Rgs5Acta2.Cd9 |
475 | SN_13-4 | Substantia nigra & Ventral tegmental area | Mural | Rgs5Acta2 | Cbr2 | Mural.Rgs5Acta2.Cbr2 | Mural.Rgs5Acta2.Cbr2 |
476 | SN_13-5 | Substantia nigra & Ventral tegmental area | Mural | Rgs5Acta2 | Fos | Mural.Rgs5Acta2.Fos | Mural.Rgs5Acta2.Fos |
477 | SN_10-1 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tfr | Slco3a1 | Oligodendrocyte.Tfr.Slco3a1 | Oligodendrocyte.Tfr.Slco3a1 |
478 | SN_10-2 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tfr | Plin3 | Oligodendrocyte.Tfr.Plin3 | Oligodendrocyte.Tfr.Plin3 |
479 | SN_10-3 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tfr | Ndrg2 | Oligodendrocyte.Tfr.Ndrg2 | Oligodendrocyte.Tfr.Ndrg2 |
480 | SN_10-4 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tfr | Il33 | Oligodendrocyte.Tfr.Il33 | Oligodendrocyte.Tfr.Il33 |
481 | SN_10-5 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tfr | Ctps | Oligodendrocyte.Tfr.Ctps | Oligodendrocyte.Tfr.Ctps |
482 | SN_11-1 | Substantia nigra & Ventral tegmental area | Oligodendrocyte | Tnr | Rps24 | Oligodendrocyte.Tnr.Rps24 | Oligodendrocyte.Tnr.Rps24 |
483 | SN_5-1 | Substantia nigra & Ventral tegmental area | Polydendrocyte | Tnr | Bmp4 | Polydendrocyte.Tnr.Bmp4 | Polydendrocyte.Tnr.Bmp4 |
484 | SN_5-2 | Substantia nigra & Ventral tegmental area | Polydendrocyte | Tnr | Tmem2 | Polydendrocyte.Tnr.Tmem2 | Polydendrocyte.Tnr.Tmem2 |
485 | SN_5-3 | Substantia nigra & Ventral tegmental area | Polydendrocyte | Tnr | Opalin | Polydendrocyte.Tnr.Opalin | Polydendrocyte.Tnr.Opalin |
486 | SN_6-1 | Substantia nigra & Ventral tegmental area | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
487 | SN_6-2 | Substantia nigra & Ventral tegmental area | Polydendrocyte | Tnr | Cspg5-Dad1 | Polydendrocyte.Tnr.Cspg5-Dad1 | Polydendrocyte.Tnr.Cspg5-Dad1 |
488 | SN_1-1 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a7 | C1ql3 | Neuron.Slc17a7.C1ql3 | Hippocampus Excitatory Neuron |
489 | SN_2-1 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | NA | Neuron.Slc17a6 | Thalamus, glutamatergic |
490 | SN_3-1 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Nfib-Satb1 | Neuron.Gad1Gad2.Nfib-Satb1 | Supramammillary Nucleus (SuM) |
491 | SN_3-10 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | Cacna2d1 | Neuron.Slc17a6.Cacna2d1 | generic SN/VTA glutamatergic neuron |
492 | SN_3-11 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | Shox2 | Neuron.Slc17a6.Shox2 | peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL) |
493 | SN_3-12 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | Nkx6-1 | Neuron.Slc17a6.Nkx6-1 | SN/VTA (SNr) |
494 | SN_3-13 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Sema3e | Neuron.Gad1Gad2.Sema3e | SN/VTA (SNr) |
495 | SN_3-14 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Ttn | Neuron.Gad1Gad2.Ttn | red nucleus, magnocellular/parvicellular (RMC/RPC) |
496 | SN_3-15 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | C1ql2 | Neuron.Slc17a6.C1ql2 | red nucleus, magnocellular/parvicellular (RMC/RPC) |
497 | SN_3-16 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Gad2-Kcnc3 | Neuron.Gad1Gad2.Gad2-Kcnc3 | GABAergic, K/Na Channel State |
498 | SN_3-17 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Sema3e-Kcng4 | Neuron.Gad1Gad2.Sema3e-Kcng4 | GABAergic, K Channel State, Sema3e+ SN/VTA (SNr) |
499 | SN_3-18 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Pax5 | Neuron.Gad1Gad2.Pax5 | SN/VTA (SNr) |
500 | SN_3-19 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Tmem132c | Neuron.Gad1Gad2.Tmem132c | SN/VTA (SNr) |
501 | SN_3-2 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Otx2-Chrna3 | Neuron.Gad1Gad2.Otx2-Chrna3 | SN/VTA (dorsal SNr) |
502 | SN_3-3 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Gad2 | Neuron.Gad1Gad2.Gad2 | generic SN/VTA GABAergic neuron |
503 | SN_3-4 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Ndnf | Neuron.Gad1Gad2.Ndnf | medial geniculate nucleus, ventral part (MGV)? Or State? |
504 | SN_3-5 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Rln3 | Neuron.Gad1Gad2.Rln3 | parabrachial pigmented nucleus (PBP) |
505 | SN_3-6 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | Tcf4 | Neuron.Slc17a6.Tcf4 | Supramammillary Nucleus (SuM) |
506 | SN_3-7 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6-Gad2-Th | Crhbp | Neuron.Slc17a6-Gad2-Th.Crhbp | Supramammillary Nucleus (SuM) Dopaminergic?, Th+/Ddc+ |
507 | SN_3-8 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Gad1Gad2 | Fos | Neuron.Gad1Gad2.Gad2-Fos | IEG state, GABAergic |
508 | SN_3-9 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Slc17a6 | Nts | Neuron.Slc17a6.Nts | peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL) |
509 | SN_4-1 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th-Slc17a6 | Lpl | Neuron.Th-Slc17a6-Lpl | VTA (ventral VTA) |
510 | SN_4-2 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Cbln1 | Neuron.Th.Cbln1 | VTA (dorsal VTA) |
511 | SN_4-3 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Cyp26b1 | Neuron.Th.Cyp26b1 | SNc/VTA |
512 | SN_4-4 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | C1ql3 | Neuron.Th.C1ql3 | VTA (dorsal VTA) |
513 | SN_4-5 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Vcan | Neuron.Th.Vcan | SNc |
514 | SN_4-6 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Cadm2 | Neuron.Th.Cadm2 | Cadm2 state |
515 | SN_4-7 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Nefm | Neuron.Th.Nefl | Neurofilament state |
516 | SN_4-8 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Anxa1 | Neuron.Th.Aldh1a1 | SNc/VTA |
517 | SN_4-9 | Substantia nigra & Ventral tegmental area | Neuron Substantia nigra & Ventral tegmental area | Th | Grin2c | Neuron.Th.Grin2c | SNc |
518 | TH_11-1 | Thalamus | Astrocyte | Gja1 | Myoc | Astrocyte.Gja1.Myoc | Astrocyte.Gja1.Myoc |
519 | TH_11-2 | Thalamus | Astrocyte | Gja1 | Vegfa | Astrocyte.Gja1.Vegfa | Astrocyte.Gja1.Vegfa |
520 | TH_4-1 | Thalamus | Endothelial_Stalk | Flt1 | Gkn3 | Endothelial_Stalk.Flt1.Gkn3 | Endothelial_Stalk.Flt1.Gkn3 |
521 | TH_4-2 | Thalamus | Endothelial_Stalk | Flt1 | Pi16 | Endothelial_Stalk.Flt1.Pi16 | Endothelial_Stalk.Flt1.Pi16 |
522 | TH_4-3 | Thalamus | Endothelial_Stalk | Flt1 | Car4 | Endothelial_Stalk.Flt1.Car4 | Endothelial_Stalk.Flt1.Car4 |
523 | TH_4-4 | Thalamus | Endothelial_Stalk | Flt1 | Vwf | Endothelial_Stalk.Flt1.Vwf | Endothelial_Stalk.Flt1.Vwf |
524 | TH_6-1 | Thalamus | Endothelial_Tip | Dcn | Dcn | Endothelial_Tip.Dcn | Endothelial_Tip.Dcn |
525 | TH_6-2 | Thalamus | Endothelial_Tip | Dcn | Dcn.Nenf | Endothelial_Tip.Dcn.Nenf | Endothelial_Tip.Dcn.Nenf |
526 | TH_10-1 | Thalamus | Ependymal | Ccdc153 | NA | Ependymal.Ccdc153 | Ependymal.Ccdc153 |
527 | TH_7-1 | Thalamus | Macrophage | C1qb | Mrc1 | Macrophage.C1qb.Mrc1 | Resident macrophage |
528 | TH_7-2 | Thalamus | Microglia | C1qb | Tmem119 | Microglia.C1qb.Tmem119 | Microglia.C1qb.Tmem119 |
529 | TH_5-1 | Thalamus | Mural | Rgs5Acta2 | Cnn1 | Mural.Rgs5Acta2.Cnn1 | Mural.Rgs5Acta2.Cnn1 |
530 | TH_5-2 | Thalamus | Mural | Rgs5Acta2 | Car4 | Mural.Rgs5Acta2.Car4 | Mural.Rgs5Acta2.Car4 |
531 | TH_8-1 | Thalamus | Oligodendrocyte | Trf | Klk6 | Oligodendrocyte.Trf.Klk6 | Oligodendrocyte.Trf.Klk6 |
532 | TH_8-2 | Thalamus | Oligodendrocyte | Trf | Il33 | Oligodendrocyte.Trf.Il33 | Oligodendrocyte.Trf.Il33 |
533 | TH_8-3 | Thalamus | Oligodendrocyte | Trf | Ctps | Oligodendrocyte.Trf.Ctps | Oligodendrocyte.Trf.Ctps |
534 | TH_8-4 | Thalamus | Oligodendrocyte | Trf | Ndrg2 | Oligodendrocyte.Trf.Ndrg2 | Oligodendrocyte.Trf.Ndrg2 |
535 | TH_9-1 | Thalamus | Oligodendrocyte | Trf | Ndrg2 | Oligodendrocyte.Trf.Ndrg2 | Oligodendrocyte.Trf.Ndrg2 |
536 | TH_12-1 | Thalamus | Polydendrocyte | Tnr | Pdgfa | Polydendrocyte.Tnr.Pdgfa | Polydendrocyte.Tnr.Pdgfa |
537 | TH_12-2 | Thalamus | Polydendrocyte | Tnr | Ctps | Polydendrocyte.Tnr.Ctps | Polydendrocyte.Tnr.Ctps |
538 | TH_12-3 | Thalamus | Polydendrocyte | Tnr | Bmp4 | Polydendrocyte.Tnr.Bmp4 | Polydendrocyte.Tnr.Bmp4 |
539 | TH_12-4 | Thalamus | Polydendrocyte | Tnr | Cspg5 | Polydendrocyte.Tnr.Cspg5 | Polydendrocyte.Tnr.Cspg5 |
540 | TH_1-1 | Thalamus | Neuron Thalamus | Slc17a7 | Tac2.Chat | Neuron.Slc17a7.Tac2.Chat | Habenular cholinergic cells |
541 | TH_1-2 | Thalamus | Neuron Thalamus | Slc17a7 | Tac2.Syt15 | Neuron.Slc17a7.Tac2.Syt15 | Medial habenula |
542 | TH_1-3 | Thalamus | Neuron Thalamus | Slc17a7 | Tac2.Wif1 | Neuron.Slc17a7.Tac2.Wif1 | Medial habenular, lateral portion |
543 | TH_1-4 | Thalamus | Neuron Thalamus | Slc17a7 | Tac2.Htr2c | Neuron.Slc17a7.Tac2.Htr2c | Lateral habenula |
544 | TH_2-1 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Atp2b4 | Neuron.Slc17a6.Rora.Atp2b4 | Lateral Geniculate Nucleus (LGN) |
545 | TH_2-10 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Cacng4 | Neuron.Slc17a6.Rora.Cacng4 | Non-anterior nuclei |
546 | TH_2-11 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Pvalb | Neuron.Slc17a6.Rora.Pvalb | Non-anterior nuclei |
547 | TH_2-2 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Nptxr | Neuron.Slc17a6.Rora.Nptxr | Reuniens thalamic nucleus? |
548 | TH_2-3 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Calca | Neuron.Slc17a6.Rora.Calca | Parafasicular nucleus (PF) |
549 | TH_2-4 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Nrp2 | Neuron.Slc17a6.Rora.Nrp2 | Anterior thalamus |
550 | TH_2-5 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.C1ql2 | Neuron.Slc17a6.Rora.C1ql2 | Anterodorsal thalamic nucleus |
551 | TH_2-6 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Fgf10 | Neuron.Slc17a6.Rora.Fgf10 | Lateral dorsal thalamic nuclei (LD) |
552 | TH_2-7 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Lypd6 | Neuron.Slc17a6.Rora.Lypd6 | Parafasicular nucleus (PF) |
553 | TH_2-8 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Cbln2 | Neuron.Slc17a6.Rora.Cbln2 | Neuron.Slc17a6.Rora.Cbln2 |
554 | TH_2-9 | Thalamus | Neuron Thalamus | Slc17a6 | Rora.Lrrtm2 | Neuron.Slc17a6.Rora.Lrrtm2 | Cadm2 state |
555 | TH_3-1 | Thalamus | Neuron Thalamus | Gad1Gad2 | Six3-Adcy1 | Neuron.Gad1Gad2.Six3-Adcy1 | Reticular formation |
556 | TH_3-10 | Thalamus | Neuron Thalamus | Slc17a6 | Ebf1 | Neuron.Slc17a6.Ebf1 | Anterior pretectal nucleus (APT) |
557 | TH_3-11 | Thalamus | Neuron Thalamus | Gad1Gad2 | Ttn | Neuron.Gad1Gad2.Ttn | Neuron.Gad1Gad2.Ttn |
558 | TH_3-2 | Thalamus | Neuron Thalamus | Gad1Gad2 | Six3-Sst | Neuron.Gad1Gad2.Six3-Sst | Reticular formation |
559 | TH_3-3 | Thalamus | Neuron Thalamus | Gad1Gad2 | Pou6f2-Pax6 | Neuron.Gad1Gad2.Pou6f2-Pax6 | Zona incerta (ZI) |
560 | TH_3-4 | Thalamus | Neuron Thalamus | Slc17a6 | Pitx2 | Neuron.Slc17a6.Pitx2 | Subthalamic nucleus (STN) |
561 | TH_3-5 | Thalamus | Neuron Thalamus | Gad1Gad2 | Chrnb3 | Neuron.Gad1Gad2.Chrnb3 | interneuron, Lateral Geniculate Nucleus (LGN) |
562 | TH_3-6 | Thalamus | Neuron Thalamus | Gad1Gad2 | Gata3 | Neuron.Gad1Gad2.Gata3 | Periacqueductal gray (PAG) (or adjacent APTD) |
563 | TH_3-7 | Thalamus | Neuron Thalamus | Slc17a6-Gad1Gad2 | Asb4 | Neuron.Slc17a6-Gad1Gad2.Asb4 | Periventricular Fiber System (Pv) |
564 | TH_3-8 | Thalamus | Neuron Thalamus | Gad1Gad2 | Col25a1 | Neuron.Gad1Gad2.Col25a1 | Neuron.Gad1Gad2.Col25a1 |
565 | TH_3-9 | Thalamus | Neuron Thalamus | Slc17a6 | Nrgn | Neuron.Slc17a6.Nrgn | Habenula (inferomedial and lateral) |