Whole Brain: Saunders et al 2018 “DropViz”
Search the neuron dataset by Saunders et al: Neurotransmitter
More information on methods here
Heatmap units: mean log2(counts per 10,000 + 1)
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Index | Metacell ID | Neurotransmitter | Tissue | Class marker | Type marker | Full name | Common name |
1 | CB_1-1 | glutamate | Cerebellum | Slc17a7 | Gabra6 | Neuron.Slc17a7.Gabra6 | Granule cells |
2 | CB_2-1 | GABA | Cerebellum | Gad1Gad2 | Pcp2 | Neuron.Gad1Gad2.Pcp2 | Purkinje Neurons |
3 | CB_3-1 | GABA | Cerebellum | Gad1Gad2 | Pvalb-Nefh | Neuron.Gad1Gad2.Pvalb-Nefh | Cerebellum basket cells 1 |
4 | CB_3-2 | GABA | Cerebellum | Gad1Gad2 | Pvalb-Rab3b | Neuron.Gad1Gad2.Pvalb-Rab3b | Cerebellum basket cells 2 |
5 | CB_3-3 | GABA | Cerebellum | Gad1Gad2 | Pvalb-Cadm1 | Neuron.Gad1Gad2.Pvalb-Cadm1 | Cerebellum basket cells 3 |
6 | CB_3-4 | GABA | Cerebellum | Gad1Gad2 | Pvalb – Chrm2 | Neuron.Gad1Gad2.Pvalb-Chrm2 | Cerebellum basket cells 4 |
7 | CB_4-1 | glutamate | Cerebellum | Slc17a6 | Sln | Neuron.Slc17a6.Sln | Unipolar brush cell |
8 | CB_4-2 | GABA | Cerebellum | Gad1Gad2 | Lgi2 | Neuron.Gad1Gad2.Lgi2 | Golgi interneuron |
9 | CB_4-3 | glutamate | Cerebellum | Slc17a6 | Nrgn | Neuron.Slc17a6.Nrgn | Inferior colliculus |
10 | FC_1-1 | GABA | Frontal Cortex | Gad1Gad2 | Cplx3-Npy | Neuron.Gad1Gad2.Cplx3 | Neuron.Gad1Gad2.Cplx3 |
11 | FC_1-10 | GABA, glutamate | Frontal Cortex | Gad1Gad2-Slc17a8 | Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 |
12 | FC_1-11 | GABA | Frontal Cortex | Gad1Gad2 | Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg |
13 | FC_1-2 | GABA | Frontal Cortex | Gad1Gad2 | Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln |
14 | FC_1-3 | GABA | Frontal Cortex | Gad1Gad2 | Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat |
15 | FC_1-4 | GABA | Frontal Cortex | Gad1Gad2 | Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 |
16 | FC_1-5 | GABA, acetylcholine | Frontal Cortex | Gad1Gad2-Chat | Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 | Cholinergic cortical interneurons |
17 | FC_1-6 | GABA | Frontal Cortex | Gad1Gad2 | Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x |
18 | FC_1-7 | GABA | Frontal Cortex | Gad1Gad2 | Synpr-Dpy19l1 | Neuron.Gad1Gad2.Synpr-Dpy19l1 | Neuron.Gad1Gad2.Synpr-Dpy19l1 |
19 | FC_1-8 | GABA | Frontal Cortex | Gad1Gad2 | Cplx3-Dpy19l1 | Neuron.Gad1Gad2.Cplx3-Dpy19l1 | Neuron.Gad1Gad2.Cplx3-Dpy19l1 |
20 | FC_1-9 | GABA | Frontal Cortex | Gad1Gad2 | Cplx3-Crim1 | Neuron.Gad1Gad2.Cplx3-Crim1 | Neuron.Gad1Gad2.Cplx3-Crim1 |
21 | FC_11-2 | glutamate | Frontal Cortex | Slc17a6 | Reln | Neuron.Slc17a6.Reln | Cajal-Retzius |
22 | FC_2-1 | GABA | Frontal Cortex | Gad1Gad2 | Sst-Chodl | Neuron.Gad1Gad2.Sst-Chodl | MGE-derived cortical interneurons–Long-range-projecting interneurons |
23 | FC_2-10 | GABA, Th | Frontal Cortex | Gad1Gad2-Th | Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 | MGE-derived cortical interneurons |
24 | FC_2-2 | GABA | Frontal Cortex | Gad1Gad2 | Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn | MGE-derived cortical interneurons–Martinotti cells |
25 | FC_2-3 | GABA | Frontal Cortex | Gad1Gad2 | Sst-Calb2 | Neuron.Gad1Gad2.Sst-Calb2 | MGE-derived cortical interneurons–Martinotti cells |
26 | FC_2-4 | GABA | Frontal Cortex | Gad1Gad2 | Sst-Crh | Neuron.Gad1Gad2.Sst-Crh | MGE-derived cortical interneurons–Martinotti cells |
27 | FC_2-5 | GABA | Frontal Cortex | Gad1Gad2 | Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 | MGE-derived cortical interneurons–Martinotti cells |
28 | FC_2-6 | GABA | Frontal Cortex | Gad1Gad2 | Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b | MGE-derived cortical interneurons–Chandelier cells |
29 | FC_2-7 | GABA | Frontal Cortex | Gad1Gad2 | Pvalb | Neuron.Gad1Gad2.Pvalb | MGE-derived cortical interneurons–basket cells |
30 | FC_2-8 | GABA | Frontal Cortex | Gad1Gad2 | Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm | MGE-derived cortical interneurons–basket cells |
31 | FC_2-9 | GABA | Frontal Cortex | Gad1Gad2 | Pvalb-Necab1 | Neuron.Gad1Gad2.Pvalb-Necab1 | MGE-derived cortical interneurons–basket cells |
32 | FC_3-1 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Sema5a | Neuron.Slc17a7.Syt6-Sema5a | Deep layer pyramidal cells |
33 | FC_3-10 | glutamate | Frontal Cortex | Slc17a7-Slc17a8 | Syt6-Cplx3 | Neuron.Slc17a7-Slc17a8.Syt6-Cplx3 | Deep layer pyramidal cells–Cortical Subplate |
34 | FC_3-11 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Bdnf | Neuron.Slc17a7.Syt6-Bdnf | Deep layer pyramidal cells |
35 | FC_3-12 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Kit | Neuron.Slc17a7.Syt6-Kit | Deep layer pyramidal cells |
36 | FC_3-13 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Fos | Neuron.Slc17a7.Syt6-Fos | Deep layer pyramidal cells (IEG) |
37 | FC_3-2 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Etv1 | Neuron.Slc17a7.Syt6-Etv1 | Deep layer pyramidal cells-Etv1 typically marks layer 5b, but some expression in layer 6, especially in medial regions like cingulate |
38 | FC_3-3 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Efna5 | Neuron.Slc17a7.Syt6-Efna5 | Deep layer pyramidal cells |
39 | FC_3-4 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Cyp26b1 | Neuron.Slc17a7.Syt6-Cyp26b1 | Deep layer pyramidal cells |
40 | FC_3-5 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Slc30a3 | Neuron.Slc17a7.Syt6-Slc30a3 | Deep layer pyramidal cells |
41 | FC_3-6 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Slc24a2 | Neuron.Slc17a7.Syt6-Slc24a2 | Deep layer pyramidal cells |
42 | FC_3-7 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Lypd1 | Neuron.Slc17a7.Syt6-Lypd1 | Deep layer pyramidal cells–medial-lateral spatial gradient |
43 | FC_3-8 | glutamate | Frontal Cortex | Slc17a7-Slc17a6 | Syt6-Nnat | NeuronSlc17a7-Slc17a6.Syt6-Nnat | Deep layer pyramidal cells–medial cortex |
44 | FC_3-9 | glutamate | Frontal Cortex | Slc17a7 | Syt6-Sema3c | Neuron.Slc17a7.Syt6-Sema3c | Deep layer pyramidal cells |
45 | FC_4-1 | glutamate | Frontal Cortex | Slc17a6-Slc17a7-Slc17a8 | Fezf2.Slc17a8 | Neuron.Slc17a6-Slc17a7-Slc17a8.Fezf2.Slc17a8 | Deep layer pyramidal cells-Layer 5b |
46 | FC_4-2 | glutamate | Frontal Cortex | Slc17a6-Slc17a7 | Fezf2.3110035E14Rik | Neuron.Slc17a6-Slc17a7.Fezf2.3110035E14Rik | Deep layer pyramidal cells-Layer 5b |
47 | FC_5-1 | glutamate | Frontal Cortex | Slc17a6-Slc17a7 | Nr4a2 | Neuron.Slc17a6-Slc17a7.Nr4a2 | Claustrum |
48 | FC_6-1 | glutamate | Frontal Cortex | Slc17a7 | Nptxr-Calb1 | Neuron.Slc17a7.Nptxr-Calb1 | Superficial layer pyramidal cells–Layer 2/3 |
49 | FC_6-2 | glutamate | Frontal Cortex | Slc17a7 | Nptxr-Ndst4 | Neuron.Slc17a7.Nptxr-Ndst4 | Superficial layer pyramidal cells–dorsal endopiriform nucleus or piriform cortex |
50 | FC_6-3 | glutamate | Frontal Cortex | Slc17a7-Slc17a6 | Nptxr-Rorb | Neuron.Slc17a7-Slc17a6.Nptxr-Rorb | Deep layer pyramidal cells–Layer 5a |
51 | FC_6-4 | glutamate | Frontal Cortex | Slc17a7 | Nptxr-Deptor | Neuron.Slc17a7.Nptxr-Deptor | Deep layer pyramidal cells–Layer 5a |
52 | FC_6-5 | glutamate | Frontal Cortex | Slc17a7 | Nptxr-Fos | Neuron.Slc17a7.Nptxr-Fos | Deep layer pyramidal cells (IEG) |
53 | FC_6-6 | glutamate | Frontal Cortex | Slc17a7 | Nptxr-Drd1 | Neuron.Slc17a7.Nptxr-Drd1 | Deep layer pyramidal cells |
54 | FC_7-1 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Ndnf | Neuron.Slc17a7.Parm1.Ndnf | Deep layer pyramidal cells–layer 5 |
55 | FC_7-2 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Nnat | Neuron.Slc17a7.Parm1.Nnat | Deep layer pyramidal cells–layer 5 |
56 | FC_7-3 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Lsamp | Neuron.Slc17a7.Parm1.Lsamp | Deep layer pyramidal cells–layer 5 |
57 | FC_7-4 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Fos | Neuron.Slc17a7.Parm1.Fos | Deep layer pyramidal cells–layer 5 (IEG) |
58 | FC_7-5 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Cadm2 | Neuron.Slc17a7.Parm1.Cadm2 | Deep layer pyramidal cells–layer 5 |
59 | FC_7-6 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Nefm | Neuron.Slc17a7.Parm1.Nefm | Deep layer pyramidal cells–layer 5 |
60 | FC_7-7 | glutamate | Frontal Cortex | Slc17a7 | Parm1.Tshz2 | Neuron.Slc17a7.Parm1.Tshz2 | Deep layer pyramidal cells–layer 5 |
61 | PC_1-1 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Cplx3 | Neuron.Slc17a7.Syt6-Cplx3 | Cortical Subplate pyramidal cells |
62 | PC_1-2 | glutamate | Posterior Cortex | Slc17a7-Slc17a8 | Syt6-Lancl3 | Neuron.Slc17a7-Slc17a8.Syt6-Lancl3 | Cortical Subplate pyramidal cells |
63 | PC_1-3 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Tshz2-Nrep | Neuron.Slc17a7.Syt6-Tshz2-Nrep | Subiculum and Entorhinal Cortex |
64 | PC_1-4 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Sla | Neuron.Slc17a7.Syt6-Sla | Layer6a |
65 | PC_1-5 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Nnat | Neuron.Slc17a7.Syt6-Nnat | Neuron.Slc17a7.Syt6-Nnat |
66 | PC_1-6 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Slc24a2 | Neuron.Slc17a7.Syt6-Slc24a2 | Cadm2+, not selective |
67 | PC_1-7 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Tox | Neuron.Slc17a7.Syt6-Tox | Neuron.Slc17a7.Syt6-Tox |
68 | PC_1-8 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Nefm | Neuron.Slc17a7.Syt6-Nefm | Layer 6a |
69 | PC_1-9 | glutamate | Posterior Cortex | Slc17a7 | Syt6-Fos | Neuron.Slc17a7.Syt6-Fos | IEG+ |
70 | PC_2-1 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Ddit4l | Neuron.Sc17a7.Calb1-Ddit4l | Neurofilament, Layer4? |
71 | PC_2-10 | glutamate | Posterior Cortex | Slc17a7-Slc17a6 | Rorb-Pcdh20 | Neuron.Slc17a7-Slc17a6.Rorb-Pcdh20 | Layer 5a |
72 | PC_2-11 | glutamate | Posterior Cortex | Slc17a7 | Rorb-Gpr83 | Neuron.Sc17a7.Rorb-Gpr83 | Layer 5a |
73 | PC_2-12 | glutamate | Posterior Cortex | Slc17a7 | Fermt1 | Neuron.Sc17a7.Fermt1 | Subiculum/Parasubiculum |
74 | PC_2-13 | glutamate | Posterior Cortex | Slc17a7-Slc17a6 | Calb1-Rorb-Il1rapl2 | Neuron.Slc17a7-Slc17a6.Calb1-Rorb-Il1rapl2 | Layer 5b |
75 | PC_2-14 | glutamate | Posterior Cortex | Slc17a7-Slc17a6 | Tshz2 | Neuron.Slc17a7-Slc17a6.Tshz2 | Retrosplenial cortex (RSG)/Subiculum/Parasubiculum |
76 | PC_2-15 | glutamate | Posterior Cortex | Slc17a7 | Oprk1 | Neuron.Sc17a7.Oprk1 | Claustrum? |
77 | PC_2-16 | glutamate | Posterior Cortex | Slc17a7 | Crym | Neuron.Sc17a7.Crym | Subiculum |
78 | PC_2-17 | glutamate | Posterior Cortex | Slc17a7 | Sema3e-Nnat | Neuron.Sc17a7.Sema3e-Nnat | Layer 6 |
79 | PC_2-18 | glutamate | Posterior Cortex | Slc17a7 | Sema3e-Onecut2 | Neuron.Sc17a7.Sema3e-Onecut2 | Layer 6 |
80 | PC_2-2 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Tshz2 | Neuron.Sc17a7.Calb1-Tshz2 | Retrosplenial cortex (RSG)/Entorhinal cortex, Layer 2/3 |
81 | PC_2-3 | glutamate | Posterior Cortex | Slc17a7 | Tshz2-Smoc1 | Neuron.Sc17a7.Tshz2-Smoc1 | Agranular Retrosplenial cortex (RSG) (Smoc1+) |
82 | PC_2-4 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Fos | Neuron.Sc17a7.Calb1-Fos | Layer 2/3, IEG+ |
83 | PC_2-5 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Lpl | Neuron.Sc17a7.Calb1-Lpl | Layer 2/3 |
84 | PC_2-6 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Otof | Neuron.Sc17a7.Calb1-Otof | Layer 2/3 |
85 | PC_2-7 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Lpl-Penk | Neuron.Sc17a7.Calb1-Lpl-Penk | Layer 2/3 |
86 | PC_2-8 | glutamate | Posterior Cortex | Slc17a7 | Calb1-Lpl-Cadm2 | Neuron.Sc17a7.Calb1-Lpl-Cadm2 | Layer 2/3, Cadm2+ |
87 | PC_2-9 | glutamate | Posterior Cortex | Slc17a7 | Rorb-BC006965 | Neuron.Sc17a7.Rorb-BC006965 | Layer 5a, BC006965+ |
88 | PC_3-1 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Cbln1 | Neuron.Slc17a7.Bcl6-Cbln1 | Layer 5a, entorhinal cortex , Cbln1+ |
89 | PC_3-10 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Npnt | Neuron.Slc17a7.Bcl6-Npnt | Layer 5a |
90 | PC_3-2 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Dditl | Neuron.Slc17a7.Bcl6-Dditl | Layer 5a |
91 | PC_3-3 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-C1ql2 | Neuron.Slc17a7.Bcl6-C1ql2 | Retrosplenial cortex (RSG), layer 5a |
92 | PC_3-4 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Tcerg1l | Neuron.Slc17a7.Bcl6-Tcerg1l | Layer 5a |
93 | PC_3-5 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Fos | Neuron.Slc17a7.Bcl6-Fos | Layer 5a, IEG+ |
94 | PC_3-6 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Ndst4 | Neuron.Slc17a7.Bcl6-Ndst4 | Subiculum |
95 | PC_3-7 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Ptgfr | Neuron.Slc17a7.Bcl6-Ptgfr | Postsubiculum |
96 | PC_3-8 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Tshz2-Syt2 | Neuron.Slc17a7.Bcl6-Tshz2-Syt2 | Layer 5a, Entorhinal cortex, Tshz1+ |
97 | PC_3-9 | glutamate | Posterior Cortex | Slc17a7 | Bcl6-Pvalb | Neuron.Slc17a7.Bcl6-Pvalb | Layer 5a |
98 | PC_4-1 | GABA | Posterior Cortex | Gad1Gad2 | Cplx3-Reln | Neuron.Gad1Gad2.Cplx3-Reln | Cortical subplate interneuron |
99 | PC_4-2 | GABA | Posterior Cortex | Gad1Gad2 | Cplx3-Npy | Neuron.Gad1Gad2.Cplx3-Npy | Cortical subplate interneuron |
100 | PC_4-3 | GABA | Posterior Cortex | Gad1Gad2 | Cplx3-Egln3 | Neuron.Gad1Gad2.Cplx3-Egln3 | Cortical subplate interneuron |
101 | PC_4-4 | GABA, glutamate | Posterior Cortex | Gad1Gad2-Slc17a8 | Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 | Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 |
102 | PC_4-5 | GABA | Posterior Cortex | Gad1Gad2 | Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg | Neuron.Gad1Gad2.Synpr-Sncg |
103 | PC_4-6 | GABA | Posterior Cortex | Gad1Gad2 | Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat | Neuron.Gad1Gad2.Synpr-Nnat |
104 | PC_4-7 | GABA | Posterior Cortex | Gad1Gad2 | Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 | Neuron.Gad1Gad2.Synpr-Crispld2 |
105 | PC_4-8 | GABA, acetylcholine | Posterior Cortex | Gad1Gad2-Chat | Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 | Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 |
106 | PC_4-9 | GABA | Posterior Cortex | Gad1Gad2 | Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x | Neuron.Gad1Gad2.Synpr-Pcdh11x |
107 | PC_5-1 | GABA | Posterior Cortex | Gad1Gad2 | Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b | Neuron.Gad1Gad2.Pvalb-Unc5b |
108 | PC_5-2 | GABA | Posterior Cortex | Gad1Gad2 | Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm | Neuron.Gad1Gad2.Pvalb-Nefm |
109 | PC_5-3 | GABA | Posterior Cortex | Gad1Gad2 | Pvalb-Cartpt | Neuron.Gad1Gad2.Pvalb-Cartpt | Neuron.Gad1Gad2.Pvalb-Cartpt |
110 | PC_5-4 | GABA, Th | Posterior Cortex | Gad1Gad2-Th | Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 | Neuron.Gad1Gad2-Th.Nr4a2 |
111 | PC_5-5 | GABA | Posterior Cortex | Gad1Gad2 | Sst-Crh | Neuron.Gad1Gad2.Sst-Crh | Neuron.Gad1Gad2.Sst-Crh |
112 | PC_5-6 | GABA | Posterior Cortex | Gad1Gad2 | Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn | Neuron.Gad1Gad2.Sst-Pdyn |
113 | PC_5-7 | GABA | Posterior Cortex | Gad1Gad2 | Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 | Neuron.Gad1Gad2.Sst-Nr2f2 |
114 | PC_6-1 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Shisa8 | Neuron.Slc17a7-Slc17a6.Shisa8 | Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum) |
115 | PC_6-2 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Fos | Neuron.Slc17a7-Slc17a6.Tshz2-Fos | Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum) |
116 | PC_6-3 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Rasd1 | Neuron.Slc17a7-Slc17a6.Tshz2-Rasd1 | Presubiculum, Col5a2+ |
117 | PC_6-4 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Nnat | Neuron.Slc17a7-Slc17a6.Tshz2-Nnat | Presubiculum, Col5a2+ |
118 | PC_6-5 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Cabp7 | Neuron.Slc17a7-Slc17a6.Tshz2-Cabp7 | Retrosplenial areas, subiculum, presubiculum, Cabp7+ |
119 | PC_6-6 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Npnt | Neuron.Slc17a7-Slc17a6.Tshz2-Npnt | Retrosplenial areas, layer 5, Npnt+ |
120 | PC_6-7 | glutamate | Posterior Cortex | Slc17a7Slc17a6 | Tshz2-Prlr | Neuron.Slc17a7-Slc17a6.Tshz2-Prlr | Entorhinal cortex? |
121 | PC_7-1 | glutamate | Posterior Cortex | Slc17a7-Slc17a8 | Fezf2-Slc17a8 | Neuron.Slc17a7-Slc17a8.Fezf2-Slc17a8 | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
122 | PC_7-2 | glutamate | Posterior Cortex | Slc17a7-Slc17a6 | Fezf2-Htr2c | Neuron.Slc17a7-Slc17a6.Fezf2-Htr2c | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
123 | PC_7-3 | glutamate | Posterior Cortex | Slc17a7-Slc17a6 | Fezf2-3110035E14Rik | Neuron.Slc17a7-Slc17a6.Fezf2-3110035E14Rik | Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+ |
124 | ENT_4-1 | glutamate | Entopeduncular nucleus & subthalamic nucleus | Slc17a7 | Zbtb20 | Neuron.Slc17a7.Zbtb20 | Ventral Hippocampus |
125 | ENT_4-10 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pmch | Neuron.Gad1Gad2.Pmch | Lateral hypothalamus (LH) |
126 | ENT_4-11 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Otx2 | Neuron.Gad1Gad2.Otx2 | ventral lateral geniculate nucleus, magnocellular part (VLGMC)? |
127 | ENT_4-12 | GABA, acetylcholine | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2-Chat | Lhx8 | Neuron.Gad1Gad2-Chat | Nucleus basalis (NB) |
128 | ENT_4-2 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Six3-Pvalb | Neuron.Gad1Gad2.Six3-Pvalb | Thalamic reticular nucleus, TRN+ |
129 | ENT_4-3 | GABA, glutamate | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2-Slc17a6 | Cbln1 | Neuron.Gad1Gad2-Slc17a6.Cbln1 | Entopeduncular Nucleus (Ent), GABA/Glu co-releasing |
130 | ENT_4-4 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Dlk1 | Neuron.Gad1Gad2.Dlk1 | Zona Incerta, ventral part (ZIV) and/or Lateral hypothalamus (LH) |
131 | ENT_4-5 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Tcf7l2 | Neuron.Gad1Gad2.Tcf7l2 | Entopeduncular Nucleus (Ent) |
132 | ENT_4-6 | glutamate | Entopeduncular nucleus & subthalamic nucleus | Slc17a6 | Pitx2 | Neuron.Slc17a6.Pitx2 | Subthalamic Nucleus (STN), maybe ENT as well |
133 | ENT_4-7 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb_Gfra2 | Neuron.Gad1Gad2.Pvalb-Gfra2 | Zona Incerta, ventral part (ZIV) |
134 | ENT_4-8 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb_Ntng1 | Neuron.Gad1Gad2.Pvalb-Ntng1 | Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal? |
135 | ENT_4-9 | GABA | Entopeduncular nucleus & subthalamic nucleus | Gad1Gad2 | Pvalb-Spp1 | Neuron.Gad1Gad2.Pvalb-Spp1 | Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal? |
136 | GP_1-1 | Acetylcholine, GABA, glutmate | Globus pallidus externus & nucleus basalis | Chat-Gad1Gad2-Slc17a8 | Ngfr | Neuron.Chat-Gad1Gad2-Slc17a8.Ngfr | Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic |
137 | GP_1-2 | Acetylcholine, GABA, glutmate | Globus pallidus externus & nucleus basalis | Chat-Gad1Gad2-Slc17a8 | Nefm | Neuron.Chat-Gad1Gad2-Slc17a8.Nefm | Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic |
138 | GP_2-1 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Tac1 | Neuron.Gad1Gad2.Tac1 | Substantia Innominata (SI) |
139 | GP_2-10 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cadm2 | Neuron.Gad1Gad2.Cadm2 | Cadm2+ state |
140 | GP_2-11 | glutamate | Globus pallidus externus & nucleus basalis | Slc17a7 | Neurod2.Rorb | Neuron.Slc17a7.Neurod2-Rorb | Nucleus of the lateral olfactory tract (LOT) |
141 | GP_2-12 | glutamate | Globus pallidus externus & nucleus basalis | Slc17a7 | Neurod2.C1ql3 | Neuron.Slc17a7.Neurod2-C1ql3 | Nucleus of the lateral olfactory tract (LOT) |
142 | GP_2-13 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Grem | Neuron.Gad1Gad2.Grem | Globus Pallidus Externus (GP), Lhx6-enriched |
143 | GP_2-14 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Pvalb | Neuron.Gad1Gad2.Scn4b | Globus Pallidus Externus (GP), “Prototypical” |
144 | GP_2-15 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Fibcd1 | Neuron.Gad1Gad2.Fibcd1 | ventral GP (vGP) |
145 | GP_2-16 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Trdn | Neuron.Gad1Gad2.Trdn | Ventral Globus Pallidus Externus (vGP) / Ventral Pallidum (VP) / magnocellular preoptic nucleus (MCPO) |
146 | GP_2-17 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Elfn1-Grik3 | Neuron.Gad1Gad2.Elfn1-Grik3 | Globus Pallidus Externus (GP) |
147 | GP_2-18 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Pappa | Neuron.Gad1Gad2.Pappa | ventral GP (vGP) |
148 | GP_2-19 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cyp26b1 | Neuron.Gad1Gad2.Cyp26b1 | Globus Pallidus Externus (GP), “Arkypallidal” |
149 | GP_2-2 | glutamate | Globus pallidus externus & nucleus basalis | Slc17a6 | Cck | Neuron.Slc17a6.Cck | Substantia Innominata (SI) |
150 | GP_2-20 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Six3-Pvalb | Neuron.Gad1Gad2.Six3-Pvalb | Thalamic reticular nucleus (TRN) |
151 | GP_2-21 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Vip | Neuron.Gad1Gad2.Vip | ventral GP (vGP) |
152 | GP_2-22 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cplx3 | Neuron.Gad1Gad2.Lamp5-Cplx3 | Substantia Innominata (SI) |
153 | GP_2-23 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Trh | Neuron.Gad1Gad2.Trh | Substantia Innominata (SI) |
154 | GP_2-24 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Igfbp4.Rgs4 | Neuron.Gad1Gad2.Igfbp4.Rgs4 | Striatum, interneuron |
155 | GP_2-25 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Igfbp4.Adora1 | Neuron.Gad1Gad2.Igfbp4.Adora1 | Striatum, interneuron |
156 | GP_2-3 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Tac2 | Neuron.Gad1Gad2.Tac2 | Substantia Innominata (SI), dorsal, bordering GP |
157 | GP_2-4 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Hpcal4 | Neuron.Gad1Gad2.Hpcal4 | Substantia Innominata (SI) |
158 | GP_2-5 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sst | Neuron.Gad1Gad2.Sst | Striatum, interneuron |
159 | GP_2-6 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Satb1 | Neuron.Gad1Gad2.Satb1 | Substantia Innominata (SI) |
160 | GP_2-7 | GABA, glutamate | Globus pallidus externus & nucleus basalis | Gad1Gad2-Slc17a6 | Cbln1 | Neuron.Gad1Gad2-Slc17a6.Cbln1 | Entopeduncular Nucleus (Ent), GABA/Glu co-releasing |
161 | GP_2-8 | glutamate | Globus pallidus externus & nucleus basalis | Slc17a6 | Tcf7l2 | Neuron.Slc17a6.Tcf7l2 | Substantia Innominata (SI) |
162 | GP_2-9 | glutamate | Globus pallidus externus & nucleus basalis | Slc17a6 | Rspo3 | Neuron.Slc17a6.Rspo3 | Substantia Innominata (SI) |
163 | GP_3-1 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Nefm | Neuron.Gad1Gad2.Drd1-Nefm | Striatum, dSPNs, neurofilament state+ |
164 | GP_3-10 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Vipr2 | Neuron.Gad1Gad2.Vipr2 | central amygdaloid nucleus, medial division, anterodorsal part (CeMAD) |
165 | GP_3-2 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Pdyn | Neuron.Gad1Gad2.Drd1-Pdyn | Striatum, patch dSPNs |
166 | GP_3-3 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Adora2a | Neuron.Gad1Gad2.Adora2a | Striatum, iSPNs |
167 | GP_3-4 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Cadm2 | Neuron.Gad1Gad2.Cadm2 | Striatum, Cadm state SPNs |
168 | GP_3-5 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Drd1-Pde1c | Neuron.Gad1Gad2.Drd1-Pde1c | Striatum, dSPNs, Pde1c + |
169 | GP_3-6 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Adora2a-Pde1c | Neuron.Gad1Gad2.Adora2a-Pde1c | Striatum, iSPNs, Pde1c + |
170 | GP_3-7 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sphkap-Tmem255a | Neuron.Gad1Gad2.Sphkap-Tmem255a | Basomedial amygdaloid nucleus (BMA) |
171 | GP_3-8 | GABA | Globus pallidus externus & nucleus basalis | Gad1Gad2 | Sphkap-Cpne4 | Neuron.Gad1Gad2.Sphkap-Cpne4 | Basomedial amygdaloid nucleus (BMA) |
172 | GP_3-9 | GABA, Th | Globus pallidus externus & nucleus basalis | Gad1Gad2-Th | Adora2a-Th | Neuron.Gad1Gad2-Th.Adora2a-Th | Striatum, Th+ SPN |
173 | HC_1-1 | GABA (Pvalb) | Hippocampus | Gad1Gad2_Pvalb | C1ql1 | Neuron.Gad1Gad2_Pvalb.C1ql1 | Interneuron, Chandelier |
174 | HC_1-10 | GABA (Sst) | Hippocampus | Gad1Gad2_Sst | Pcdh11x | Neuron.Gad1Gad2_Sst.Pcdh11x | Interneuron, OLM4 (Dentate enriched?) |
175 | HC_1-11 | GABA (Cplx3) | Hippocampus | Gad1Gad2_Cplx3 | Rxfp1 | Gad1Gad2_Cplx3.Rxfp1 | Interneuron, CA1 lacunosum moleculare1? |
176 | HC_1-12 | GABA (Cplx3) | Hippocampus | Gad1Gad2_Cplx3 | Tox | Gad1Gad2_Cplx3.Tox | Interneuron, lacunosum oriens1? |
177 | HC_1-13 | GABA (Id2) | Hippocampus | Gad1Gad2_Id2 | Tac1 | Gad1Gad2_Id2.Tac1 | Interneuron, Neurogliaform1 |
178 | HC_1-14 | GABA (Id2) | Hippocampus | Gad1Gad2_Id2 | Bcl11b | Gad1Gad2_Id2.Bcl11b | Interneuron, Neurogliaform2 |
179 | HC_1-15 | GABA (Id2) | Hippocampus | Gad1Gad2_Id2 | Prlr | Gad1Gad2_Id2.Prlr | Interneuron, Neurogliaform3 |
180 | HC_1-16 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Nnat | Gad1Gad2_Htr3a.Nnat | Interneuron, (candidate CGE-derived 1) |
181 | HC_1-17 | GABA, acetylcholine | Hippocampus | Gad1Gad2Chat_Htr3a | Chat | Gad1Gad2Chat_Htr3a.Chat | Interneuron, Cholinergic (candidate CGE-derived 2) |
182 | HC_1-18 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Phlda1 | Gad1Gad2_Htr3a.Phlda1 | Interneuron, (candidate CGE-derived 3) |
183 | HC_1-19 | GABA, glutamate | Hippocampus | Gad1Gad2Slc17a8_Htr3a | Efna5 | Gad1Gad2_Htr3a.Efba5 | Interneuron, (candidate CGE-derived 4) |
184 | HC_1-2 | GABA (Id2) | Hippocampus | Gad1Gad2_Id2 | Sfrp2 | Neuron.Gad1Gad2_Id2.Sfrp2 | Interneuron, Neurogliaform1 |
185 | HC_1-20 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Cpne5 | Gad1Gad2_Htr3a.Cpne5 | Interneuron, (candidate CGE-derived 5) |
186 | HC_1-21 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Ecel1 | Gad1Gad2_Htr3a.Ecel1 | Interneuron, (candidate CGE-derived 6) |
187 | HC_1-22 | GABA, glutamate | Hippocampus | Gad1Gad2Slc17a8_Htr3a | Ibsp | Gad1Gad2_Htr3a.Ibsp | Interneuron, (candidate CGE-derived 7) |
188 | HC_1-23 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Krt73 | Gad1Gad2_Htr3a.Krt73 | Interneuron, (candidate CGE-derived 8) |
189 | HC_1-24 | GABA, glutamate | Hippocampus | Gad1Gad2Slc17a8_Htr3a | Kctd12 | Gad1Gad2Slc17a8_Htr3a.Ktcd12 | Interneuron, GABA/Glutamate co-releasing? (candidate CGE-derived 9) |
190 | HC_1-25 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Chrm2 | Gad1Gad2_Htr3a.Chrm2 | Interneuron, (candidate CGE-derived 10) |
191 | HC_1-26 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Htr1b | Gad1Gad2_Htr3a.Htr1b | Interneuron, (candidate CGE-derived 11) |
192 | HC_1-27 | GABA (Htr3a) | Hippocampus | Gad1Gad2_Htr3a | Sema3c | Gad1Gad2_Htr3a.Sema3c | Interneuron, (candidate CGE-derived 12) |
193 | HC_1-3 | GABA (Sst) | Hippocampus | Gad1Gad2_Sst | Atp2b4 | Neuron.Gad1Gad2_Sst.Atp2b4 | Interneuron, Olm |
194 | HC_1-4 | GABA, glutamate | Hippocampus | Gad1Gad2Slc17a8_Sst | Slc17a8 | Neuron.Gad1Gad2Slc17a8_Sst.Ncam2 | Interneuron, GABA/Glutamate co-releasing? |
195 | HC_1-5 | GABA (Sst) | Hippocampus | Gad1Gad2_Sst | Spon1 | Neuron.Gad1Gad2_Sst.Spon1 | Interneuron, OLM1 |
196 | HC_1-6 | GABA (Pvalb) | Hippocampus | Gad1Gad2_Pvalb | Tac1 | Neuron.Gad1Gad2_Pvalb.Tac1 | Interneuron, Basket 1 |
197 | HC_1-7 | GABA (Pvalb) | Hippocampus | Gad1Gad2_Pvalb | Gfra1 | Neuron.Gad1Gad2_Pvalb.Gfra1 | Interneuron, Basket 1 |
198 | HC_1-8 | GABA (Sst) | Hippocampus | Gad1Gad2_Sst | Rbp4 | Neuron.Gad1Gad2_Sst.Rbp4 | Interneuron, OLM2 (CA1 enriched?) |
199 | HC_1-9 | GABA (Sst) | Hippocampus | Gad1Gad2_Sst | Grm1 | Neuron.Gad1Gad2_Sst.Grm1 | Interneuron, OLM3 (CA1 enriched?) |
200 | HC_13-1 | neurogenesis | Hippocampus | Sox4 | Efhd2 | Neurogenesis.Sox4.Efhd2 | Neurogenesis (SGZ) |
201 | HC_13-2 | neurogenesis | Hippocampus | Sox4 | Hist1h2al | Neurogenesis.Sox4.Hist1h2al | Neurogenesis (SGZ) |
202 | HC_13-3 | neurogenesis | Hippocampus | Sox4 | Cdc20 | Neurogenesis.Sox4.Cdc20 | Neurogenesis (SGZ) |
203 | HC_13-4 | neurogenesis | Hippocampus | Sox4 | Gad2 | Neurogenesis.Sox4.Gad2 | Neurogenesis (SGZ) |
204 | HC_13-5 | neurogenesis | Hippocampus | Sox4 | Gabra5 | Neurogenesis.Sox4.Gabra5 | Neurogenesis (SGZ) |
205 | HC_13-6 | neurogenesis | Hippocampus | Sox4 | Ppp2r2b | Neurogenesis.Sox4.Ppp2r2b | Neurogenesis (SGZ) |
206 | HC_14-1 | glutamate | Hippocampus | Slc17a6 | Lhx1 | Neuron.Slc17a6.Lhx1 | Cajal-retzius |
207 | HC_2-1 | glutamate | Hippocampus | Slc17a7 | Cbln4 | Neuron.Slc17a7.Cbln4 | Neuron.Slc17a7.Cbln4 |
208 | HC_2-2 | glutamate | Hippocampus | Slc17a6 | Htr1a | Neuron.Slc17a6.Htr1a | Neuron.Slc17a6.Htr1a |
209 | HC_2-3 | glutamate | Hippocampus | Slc17a6 | Nts | Neuron.Slc17a6.Nts | Neuron.Slc17a6.Nts |
210 | HC_2-4 | glutamate | Hippocampus | Slc17a6 | Nnat | Neuron.Slc17a6.Nnat | Neuron.Slc17a6.Nnat |
211 | HC_2-5 | glutamate | Hippocampus | Slc17a6 | Nell1 | Neuron.Slc17a6.Nell1 | Neuron.Slc17a6.Nell1 |
212 | HC_2-6 | glutamate | Hippocampus | Slc17a6 | Nefm | Neuron.Slc17a6.Nefm | Neuron.Slc17a6.Nefm |
213 | HC_2-7 | glutamate | Hippocampus | Slc17a6 | Grp | Neuron.Slc17a6.Grp | Neuron.Slc17a6.Grp |
214 | HC_3-1 | glutamate | Hippocampus | Slc17a7-Slc17a6 | Nxph3-Nts | Neuron.Slc17a7-Slc17a6.Nxph3-Nts | Subiculum |
215 | HC_3-10 | glutamate | Hippocampus | Slc17a7 | Nxph3-Sema3c | Neuron.Slc17a7.Nxph3-Sema3c | Entorhinal cortex |
216 | HC_3-11 | glutamate | Hippocampus | Slc17a7 | Nxph3-Ajap1 | Neuron.Slc17a7.Nxph3-Ajap1 | Entorhinal cortex |
217 | HC_3-2 | glutamate | Hippocampus | Slc17a7-Slc17a6 | Nxph3-Cbln2-Htr2c | Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Htr2c | Deep layer subiculum |
218 | HC_3-3 | glutamate | Hippocampus | Slc17a7-Slc17a6 | Nxph3-Cbln2-Kcnh8 | Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Kcnh8 | Deep layer subiculum |
219 | HC_3-4 | glutamate | Hippocampus | Slc17a7 | Nxph3-Hpcal1-Tpbg | Neuron.Slc17a7.Nxph3-Hpcal1-Tpbg | Entorhinal cortex |
220 | HC_3-5 | glutamate | Hippocampus | Slc17a7 | Nxph3-Hpcal1-Fos | Neuron.Slc17a7.Nxph3-Hpcal1-Fos | Entorhinal cortex (IEG) |
221 | HC_3-6 | glutamate | Hippocampus | Slc17a7 | Nxph3-Hpcal-Igfbp4 | Neuron.Slc17a7.Nxph3-Hpcal-Igfbp4 | Entorhinal cortex |
222 | HC_3-7 | glutamate | Hippocampus | Slc17a7 | Nxph3-Hpcal-Krt12 | Neuron.Slc17a7.Nxph3-Hpcal-Krt12 | Entorhinal cortex |
223 | HC_3-8 | glutamate | Hippocampus | Slc17a7 | Nxph3-Cplx3-Hs6st2 | Neuron.Slc17a7.Nxph3-Cplx3-Hs6st2 | Entorhinal cortex |
224 | HC_3-9 | glutamate | Hippocampus | Slc17a7 | Nxph3-Cplx3-Pappa2 | Neuron.Slc17a7.Nxph3-Cplx3-Pappa2 | Entorhinal cortex |
225 | HC_4-1 | glutamate | Hippocampus | Slc17a7 | C1ql2-Cck | Neuron.Slc17a7.C1ql2-Cck | Dentate Principal cells |
226 | HC_4-2 | glutamate | Hippocampus | Slc17a7 | C1ql2-Penk | Neuron.Slc17a7.C1ql2-Penk | Dentate Principal cells |
227 | HC_5-1 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Lypd1 | Neuron.Slc17a7.Fibcd1-Lypd1 | CA1 Principal cells (Anterior) |
228 | HC_5-10 | glutamate | Hippocampus | Slc17a7 | Cbln1-Reln | Neuron.Slc17a7.Reln | Medial entorrhinal cortexm, Reln+/Cbln1+ |
229 | HC_5-11 | glutamate | Hippocampus | Slc17a7 | Cbln1-Gpr88 | Neuron.Slc17a7.Cbln1-Gpr88 | Medial entorrhinal cortex |
230 | HC_5-12 | glutamate | Hippocampus | Slc17a7 | Cbln1-Trps1 | Neuron.Slc17a7.Cbln1-Trps1 | Medial entorrhinal cortex, Cbln1+/Trps1+ |
231 | HC_5-13 | glutamate | Hippocampus | Slc17a7 | Ptgfr | Neuron.Slc17a7.Ptgfr | Postsubiculum |
232 | HC_5-14 | glutamate | Hippocampus | Slc17a7 | Fezf2 | Neuron.Slc17a7.Fezf2-Efna5 | Subiculum |
233 | HC_5-15 | glutamate | Hippocampus | Slc17a7 | Fezf2-Rxfp1 | Neuron.Slc17a7.Fezf2-Rxfp1 | Subiculum |
234 | HC_5-2 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Nrip3 | Neuron.Slc17a7.Fibcd1-Nrip3 | CA1 Principal cells |
235 | HC_5-3 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Nptx2 | Neuron.Slc17a7.Fibcd1-Nptx2 | CA1 Principal cells |
236 | HC_5-4 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Kitl | Neuron.Slc17a7.Fibcd1-Kitl | CA1 Principal cells |
237 | HC_5-5 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Grm5 | Neuron.Slc17a7.Fibcd1-Grm5 | CA1 Principal cells |
238 | HC_5-6 | glutamate | Hippocampus | Slc17a7 | Dcn-Pou3f1 | Neuron.Slc17a7.Dcn-Pou3f1 | Anterior Subiculum, proximal to CA1 |
239 | HC_5-7 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Inhba | Neuron.Slc17a7.FIbcd1-Inhba | CA1 Principal cells |
240 | HC_5-8 | glutamate | Hippocampus | Slc17a7 | Fibcd1-Fos | Neuron.Slc17a7.Fibcd1-Fos | CA1 Principal cells |
241 | HC_5-9 | glutamate | Hippocampus | Slc17a7 | Dcn-Camk2d | Neuron.Slc17a7.Dcn-Camk2d | CA1 Principal cells |
242 | HC_6-1 | glutamate | Hippocampus | Slc17a7 | Pvrl3-Nos1 | Neuron.Slc17a7.Pvrl3-Nos1 | CA3 Principal cells |
243 | HC_6-2 | glutamate | Hippocampus | Slc17a7 | Pvrl3-Grm5 | Neuron.Slc17a7.Pvrl3-Grm5 | CA3 Principal cells |
244 | HC_6-3 | glutamate | Hippocampus | Slc17a7 | Pvrl3-St18 | Neuron.Slc17a7.Pvrl3-St18 | Lateral CA3 Principal cells |
245 | HC_6-4 | glutamate | Hippocampus | Slc17a7 | Rgs14 | Neuron.Slc17a7.Rgs14 | CA2 Principal cells |
246 | HC_6-5 | glutamate | Hippocampus | Slc17a7 | Calb2-Vgll3 | Neuron.Slc17a7.Calb2-Vgll3 | Dentate hilum? |
247 | HC_6-6 | glutamate | Hippocampus | Slc17a7 | Calb2-Adcyap1 | Neuron.Slc17a7.Calb2-Adcyap1 | Dentate hilum? |
248 | HC_6-7 | glutamate | Hippocampus | Slc17a7 | Pvrl3-Inhba | Neuron.Slc17a7.Pvrl3-Inhba | CA3 Principal cells |
249 | HC_6-8 | glutamate | Hippocampus | Slc17a7 | Pvrl3-Fos | Neuron.Slc17a7.Pvrl3-Fos | CA3 Principal cells |
250 | STR_10-1 | GABA | Striatum | Gad1Gad2 | Drd1-Fos | Neuron.Gad1Gad2.Drd1-Fos | dSPN, IEG+ |
251 | STR_10-2 | GABA | Striatum | Gad1Gad2 | Drd1-Lypd1 | Neuron.Gad1Gad2.Drd1-Lypd1 | dSPN, patch |
252 | STR_10-3 | GABA | Striatum | Gad1Gad2 | Drd1-Pde1a | Neuron.Gad1Gad2.Drd1-Pde1a | dSPN |
253 | STR_10-4 | GABA | Striatum | Gad1Gad2 | Drd1-Nefm | Neuron.Gad1Gad2.Drd1-Nefm | dSPN |
254 | STR_10-5 | GABA | Striatum | Gad1Gad2 | Drd1-Cxcl14 | Neuron.Gad1Gad2.Drd1-Cxcl14 | dSPN, lateral striatum |
255 | STR_11-1 | GABA | Striatum | Gad1Gad2 | Adora2a-Nefm | Neuron.Gad1Gad2.Adora2a-Nefm | iSPN |
256 | STR_11-2 | GABA | Striatum | Gad1Gad2 | Adora2a-Nnat | Neuron.Gad1Gad2.Adora2a-Nnat | iSPN |
257 | STR_11-3 | GABA | Striatum | Gad1Gad2 | Adora2a-Fos | Neuron.Gad1Gad2.Adora2a-Fos | iSPN, IEG+ |
258 | STR_12-1 | GABA, acetylcholine, glutamate | Striatum | Gad1Gad2-Chat-Slc17a8 | Chat | Neuron.Gad1Gad2-Chat-Slc17a8.Chat | cholinergic interneuron |
259 | STR_13-1 | GABA | Striatum | Gad1Gad2 | Drd1-Tpbg | Neuron.Gad1Gad2.Drd1-Tpbg | eccentric SPN, dSPN-like markers |
260 | STR_13-10 | GABA | Striatum | Gad1Gad2 | Drd1-Nfib | Neuron.Gad1Gad2.Drd1-Nfib | Amygdala |
261 | STR_13-11 | GABA | Striatum | Gad1Gad2 | Sgol2a | Neuron.Gad1Gad2.Sgol2a | Very small cluster |
262 | STR_13-2 | GABA | Striatum | Gad1Gad2 | Drd1-Otof | Neuron.Gad1Gad2.Drd1-Otof-Sorcs1 | eccentric SPN, dSPN-like markers |
263 | STR_13-3 | GABA | Striatum | Gad1Gad2 | Drd1-Otof | Neuron.Gad1Gad2.Drd1-Otof-Lmo2 | eccentric SPN, dSPN-like markers |
264 | STR_13-4 | GABA | Striatum | Gad1Gad2 | Adora2a-Otof | Neuron.Gad1Gad2.Adora2a-Otof | eccentric SPN, iSPN-like markers |
265 | STR_13-5 | GABA | Striatum | Gad1Gad2 | Adora2a-Th | Neuron.Gad1Gad2.Adora2a-Th | eccentric SPN, iSPN-like markers, Th+ |
266 | STR_13-6 | glutamate | Striatum | Slc17a6 | Oprk1 | Neuron.Slc17a6.Oprk1 | Claustrum cortex |
267 | STR_13-7 | glutamate | Striatum | Slc17a7 | Cplx3 | Neuron.Slc17a7.Cplx3 | Cortical subplate |
268 | STR_13-8 | glutamate | Striatum | Slc17a7 | Dkk3 | Neuron.Slc17a7.Dkk3 | Deep layer cortex |
269 | STR_13-9 | GABA | Striatum | Gad1Gad2 | Resp18 | Neuron.Gad1Gad2.Resp18 | Bed nucleus of the stria terminalis (BNST) |
270 | STR_14-1 | GABA | Striatum | Gad1Gad2 | Pvalb-Megf11 | Neuron.Gad1Gad2_Pvalb.Pvalb-Megf11 | Fast-spiking interneuron, Pvalb+ |
271 | STR_14-2 | GABA | Striatum | Gad1Gad2 | Pnoc | Neuron.Gad1Gad2.Pnoc | Fast-spiking interneuron, Pvalb+/Pnoc+ |
272 | STR_14-3 | GABA | Striatum | Gad1Gad2 | Pvalb-Rgs12 | Neuron.Gad1Gad2.Pvalb-Rgs12 | Fast-spiking interneuron, Pvalb+/Rgs12+ |
273 | STR_14-4 | GABA, Th | Striatum | Gad1Gad2-Th | Trh | Neuron.Gad1Gad2-Th.Trh | Th+ interneuron |
274 | STR_15-1 | GABA | Striatum | Gad1Gad2 | Chodl | Neuron.Gad1Gad2.Chodl | Low-threshold spiking interneuron, Npy+/Sst+ |
275 | STR_2-1 | neurogenesis | Striatum | Sox4 | Ung | Neurogenesis.Sox4.Ung | RostralÊmigratory streamÊ(RMS) |
276 | STR_2-2 | neurogenesis | Striatum | Sox4 | Stmn2 | Neurogenesis.Sox4.Stmn2 | RostralÊmigratory streamÊ(RMS) |
277 | STR_2-3 | neurogenesis | Striatum | Sox4 | Tuba1c | Neurogenesis.Sox4.Tuba1c | RostralÊmigratory streamÊ(RMS) |
278 | STR_2-4 | neurogenesis | Striatum | Sox4 | Stmn2-Csrp2 | Neurogenesis.Sox4.Stmn2-Csrp2 | RostralÊmigratory streamÊ(RMS) |
279 | STR_2-5 | neurogenesis | Striatum | Sox4 | Hist1h2al | Neurogenesis.Sox4.Hist1h2al | RostralÊmigratory streamÊ(RMS) |
280 | STR_2-6 | neurogenesis | Striatum | Sox4 | Notum | Neurogenesis.Sox4.Notum | RostralÊmigratory streamÊ(RMS) |
281 | SN_1-1 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a7 | C1ql3 | Neuron.Slc17a7.C1ql3 | Hippocampus Excitatory Neuron |
282 | SN_2-1 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | NA | Neuron.Slc17a6 | Thalamus, glutamatergic |
283 | SN_3-1 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Nfib-Satb1 | Neuron.Gad1Gad2.Nfib-Satb1 | Supramammillary Nucleus (SuM) |
284 | SN_3-10 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | Cacna2d1 | Neuron.Slc17a6.Cacna2d1 | generic SN/VTA glutamatergic neuron |
285 | SN_3-11 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | Shox2 | Neuron.Slc17a6.Shox2 | peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL) |
286 | SN_3-12 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | Nkx6-1 | Neuron.Slc17a6.Nkx6-1 | SN/VTA (SNr) |
287 | SN_3-13 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Sema3e | Neuron.Gad1Gad2.Sema3e | SN/VTA (SNr) |
288 | SN_3-14 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Ttn | Neuron.Gad1Gad2.Ttn | red nucleus, magnocellular/parvicellular (RMC/RPC) |
289 | SN_3-15 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | C1ql2 | Neuron.Slc17a6.C1ql2 | red nucleus, magnocellular/parvicellular (RMC/RPC) |
290 | SN_3-16 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Gad2-Kcnc3 | Neuron.Gad1Gad2.Gad2-Kcnc3 | GABAergic, K/Na Channel State |
291 | SN_3-17 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Sema3e-Kcng4 | Neuron.Gad1Gad2.Sema3e-Kcng4 | GABAergic, K Channel State, Sema3e+ SN/VTA (SNr) |
292 | SN_3-18 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Pax5 | Neuron.Gad1Gad2.Pax5 | SN/VTA (SNr) |
293 | SN_3-19 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Tmem132c | Neuron.Gad1Gad2.Tmem132c | SN/VTA (SNr) |
294 | SN_3-2 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Otx2-Chrna3 | Neuron.Gad1Gad2.Otx2-Chrna3 | SN/VTA (dorsal SNr) |
295 | SN_3-3 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Gad2 | Neuron.Gad1Gad2.Gad2 | generic SN/VTA GABAergic neuron |
296 | SN_3-4 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Ndnf | Neuron.Gad1Gad2.Ndnf | medial geniculate nucleus, ventral part (MGV)? Or State? |
297 | SN_3-5 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Rln3 | Neuron.Gad1Gad2.Rln3 | parabrachial pigmented nucleus (PBP) |
298 | SN_3-6 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | Tcf4 | Neuron.Slc17a6.Tcf4 | Supramammillary Nucleus (SuM) |
299 | SN_3-7 | glutamate, GABA, Th | Substantia nigra & Ventral tegmental area | Slc17a6-Gad2-Th | Crhbp | Neuron.Slc17a6-Gad2-Th.Crhbp | Supramammillary Nucleus (SuM) Dopaminergic?, Th+/Ddc+ |
300 | SN_3-8 | GABA | Substantia nigra & Ventral tegmental area | Gad1Gad2 | Fos | Neuron.Gad1Gad2.Gad2-Fos | IEG state, GABAergic |
301 | SN_3-9 | glutamate | Substantia nigra & Ventral tegmental area | Slc17a6 | Nts | Neuron.Slc17a6.Nts | peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL) |
302 | SN_4-1 | Dopamine, glutamate | Substantia nigra & Ventral tegmental area | Th-Slc17a6 | Lpl | Neuron.Th-Slc17a6-Lpl | VTA (ventral VTA) |
303 | SN_4-2 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Cbln1 | Neuron.Th.Cbln1 | VTA (dorsal VTA) |
304 | SN_4-3 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Cyp26b1 | Neuron.Th.Cyp26b1 | SNc/VTA |
305 | SN_4-4 | Dopamine | Substantia nigra & Ventral tegmental area | Th | C1ql3 | Neuron.Th.C1ql3 | VTA (dorsal VTA) |
306 | SN_4-5 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Vcan | Neuron.Th.Vcan | SNc |
307 | SN_4-6 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Cadm2 | Neuron.Th.Cadm2 | Cadm2 state |
308 | SN_4-7 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Nefm | Neuron.Th.Nefl | Neurofilament state |
309 | SN_4-8 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Anxa1 | Neuron.Th.Aldh1a1 | SNc/VTA |
310 | SN_4-9 | Dopamine | Substantia nigra & Ventral tegmental area | Th | Grin2c | Neuron.Th.Grin2c | SNc |
311 | TH_1-1 | glutamate | Thalamus | Slc17a7 | Tac2.Chat | Neuron.Slc17a7.Tac2.Chat | Habenular cholinergic cells |
312 | TH_1-2 | glutamate | Thalamus | Slc17a7 | Tac2.Syt15 | Neuron.Slc17a7.Tac2.Syt15 | Medial habenula |
313 | TH_1-3 | glutamate | Thalamus | Slc17a7 | Tac2.Wif1 | Neuron.Slc17a7.Tac2.Wif1 | Medial habenular, lateral portion |
314 | TH_1-4 | glutamate | Thalamus | Slc17a7 | Tac2.Htr2c | Neuron.Slc17a7.Tac2.Htr2c | Lateral habenula |
315 | TH_2-1 | glutamate | Thalamus | Slc17a6 | Rora.Atp2b4 | Neuron.Slc17a6.Rora.Atp2b4 | Lateral Geniculate Nucleus (LGN) |
316 | TH_2-10 | glutamate | Thalamus | Slc17a6 | Rora.Cacng4 | Neuron.Slc17a6.Rora.Cacng4 | Non-anterior nuclei |
317 | TH_2-11 | glutamate | Thalamus | Slc17a6 | Rora.Pvalb | Neuron.Slc17a6.Rora.Pvalb | Non-anterior nuclei |
318 | TH_2-2 | glutamate | Thalamus | Slc17a6 | Rora.Nptxr | Neuron.Slc17a6.Rora.Nptxr | Reuniens thalamic nucleus? |
319 | TH_2-3 | glutamate | Thalamus | Slc17a6 | Rora.Calca | Neuron.Slc17a6.Rora.Calca | Parafasicular nucleus (PF) |
320 | TH_2-4 | glutamate | Thalamus | Slc17a6 | Rora.Nrp2 | Neuron.Slc17a6.Rora.Nrp2 | Anterior thalamus |
321 | TH_2-5 | glutamate | Thalamus | Slc17a6 | Rora.C1ql2 | Neuron.Slc17a6.Rora.C1ql2 | Anterodorsal thalamic nucleus |
322 | TH_2-6 | glutamate | Thalamus | Slc17a6 | Rora.Fgf10 | Neuron.Slc17a6.Rora.Fgf10 | Lateral dorsal thalamic nuclei (LD) |
323 | TH_2-7 | glutamate | Thalamus | Slc17a6 | Rora.Lypd6 | Neuron.Slc17a6.Rora.Lypd6 | Parafasicular nucleus (PF) |
324 | TH_2-8 | glutamate | Thalamus | Slc17a6 | Rora.Cbln2 | Neuron.Slc17a6.Rora.Cbln2 | Neuron.Slc17a6.Rora.Cbln2 |
325 | TH_2-9 | glutamate | Thalamus | Slc17a6 | Rora.Lrrtm2 | Neuron.Slc17a6.Rora.Lrrtm2 | Cadm2 state |
326 | TH_3-1 | GABA | Thalamus | Gad1Gad2 | Six3-Adcy1 | Neuron.Gad1Gad2.Six3-Adcy1 | Reticular formation |
327 | TH_3-10 | glutamate | Thalamus | Slc17a6 | Ebf1 | Neuron.Slc17a6.Ebf1 | Anterior pretectal nucleus (APT) |
328 | TH_3-11 | GABA | Thalamus | Gad1Gad2 | Ttn | Neuron.Gad1Gad2.Ttn | Neuron.Gad1Gad2.Ttn |
329 | TH_3-2 | GABA | Thalamus | Gad1Gad2 | Six3-Sst | Neuron.Gad1Gad2.Six3-Sst | Reticular formation |
330 | TH_3-3 | GABA | Thalamus | Gad1Gad2 | Pou6f2-Pax6 | Neuron.Gad1Gad2.Pou6f2-Pax6 | Zona incerta (ZI) |
331 | TH_3-4 | glutamate | Thalamus | Slc17a6 | Pitx2 | Neuron.Slc17a6.Pitx2 | Subthalamic nucleus (STN) |
332 | TH_3-5 | GABA | Thalamus | Gad1Gad2 | Chrnb3 | Neuron.Gad1Gad2.Chrnb3 | interneuron, Lateral Geniculate Nucleus (LGN) |
333 | TH_3-6 | GABA | Thalamus | Gad1Gad2 | Gata3 | Neuron.Gad1Gad2.Gata3 | Periacqueductal gray (PAG) (or adjacent APTD) |
334 | TH_3-7 | glutamate, GABA | Thalamus | Slc17a6-Gad1Gad2 | Asb4 | Neuron.Slc17a6-Gad1Gad2.Asb4 | Periventricular Fiber System (Pv) |
335 | TH_3-8 | GABA | Thalamus | Gad1Gad2 | Col25a1 | Neuron.Gad1Gad2.Col25a1 | Neuron.Gad1Gad2.Col25a1 |
336 | TH_3-9 | glutamate | Thalamus | Slc17a6 | Nrgn | Neuron.Slc17a6.Nrgn | Habenula (inferomedial and lateral) |